#Proteomics

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    DeepFold-PLM: Accelerating Protein Structure Prediction via Efficient Homology Search Using Protein Language Models https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaf579/8290416?rss=1&login=false—#proteomics #prot-paper
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    Technical assistant (m/f/d) proteomics Leibniz Association: Detail https://www.leibniz-gemeinschaft.de/karriere/stellenportal/detail/job/show/Job/technischen-assistentin-mwd-proteomics—#proteomics #prot-jobs
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    Mascot Daemon can export protein level quant intensities for replicate LFQ, SILAC and iTRAQ/TMT. The latest version can also export intensity values calculated using the "Top-3" method, illustrated here with DDA-PASEF data.https://www.matrixscience.com/blog/top-3-quantitation-summary-in-mascot-daemon-3-using-dda-pasef.html#proteomics #massspec
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    Enrichment of Cysteine S-palmitoylated peptides using Sodium Deoxycholate Acid Precipitation https://www.sciencedirect.com/science/article/pii/S1535947625003172?dgcid=rss_sd_all—#proteomics #prot-paper
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    FOXO3:p (forkhead box family O, member 3) causes lots of effects if it is damaged, although the mechanism remain veiled. It's chaos ratio (㛨 = 14:86) is on the low end for a transcription factor, but it is clearly a busy substrate for multiple kinases (& phosphatases). #proteomics
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    PMADS: an integrated database of curated and proteomics-inferred associations between protein post-translational modifications and drug sensitivity https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkaf1033/8287589?login=false—#proteomics #prot-paper
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    peleke-1: A Suite of Protein Language Models Fine-Tuned for Targeted Antibody Sequence Generation https://www.biorxiv.org/content/10.1101/2025.10.16.682644v1.full.pdf+html—#proteomics #prot-preprint
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    Navigating the data processing for cytometry-based single-cell proteomics https://www.nature.com/articles/s41596-025-01257-2—#proteomics #prot-paper
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    Extracting informative glycan-specific ions from glycopeptide MS/MS spectra with GlyCounter https://www.sciencedirect.com/science/article/pii/S1535947625001847?dgcid=rss_sd_all—#proteomics #prot-paper
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    HXMS: a standardized file format for HX/MS data https://www.biorxiv.org/content/10.1101/2025.10.14.682397v1.full.pdf+html—#proteomics #prot-preprint
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    Intrinsic heterogeneity of primary cilia revealed through spatial proteomics https://www.cell.com/cell/fulltext/S0092-8674(25)01029-3?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867425010293%3Fshowall%3Dtrue—#proteomics #prot-paper
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    Spatial biology using single-cell mass spectrometry imaging and integrated microscopy https://www.nature.com/articles/s41467-025-64603-8—#proteomics #prot-paper

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