- Agilent have published an application note for recommended MassHunter Qualitative Analysis settings when searching DDA peak lists with Mascot Server. We've added it to a new help page for Agilent instruments.https://www.matrixscience.com/help/instruments_agilent.html#proteomics #MassSpec
- Mascot newsletter, April 2025:ASMS User Meeting registration is now open.Competitive displacement of lipoprotein lipase by GPIHBP1.MS2PIP models for Thermo instruments.#proteomics #massspechttps://www.matrixscience.com/nl/202504/newsletter.html
- Sometimes you need a very large sequence database, e.g. search all proteobacteria proteins. Mascot Server has no size limit. Search a database of hundreds of millions of protein sequences without running out of resources.https://www.matrixscience.com/blog/big-databases-and-large-peak-lists.html#proteomics #MassSpec
- If your computer breaks down, do you know how to restore Mascot? As long as you regularly back up the right directories and files, it's straightfoward and fully described in the online help:https://www.matrixscience.com/help/disaster_recovery.html#proteomics #MassSpec
- Mascot Newsletter, March 2025:50% more identifications in Thermo Proteome Discoverer.Maternal immune activation imprints translational dysregulation.Mascot's ML adapter framework (US HUPO 2025 poster).#proteomics #MassSpechttps://www.matrixscience.com/nl/202503/newsletter.html
- Does anyone with a degree in chemistry have any idea what the authors mean with this? HOW did they end up with 5 different functional fractions? #chemistry #OC #HPLC #MassSpec
- German mass spectrometry society (DGMS) annual meeting starting this evening in #goettingen . Looking forward to three days of science and all things #massspec!
- Mascot Distiller provides DDA LFQ for Bruker, Sciex, Thermo and Waters instruments. Retention time alignment ("match between runs"); ion mobility (Bruker TIMS); fractionation; optimised peak detection; visualisation; and more.#proteomics #MassSpechttps://www.matrixscience.com/distiller.html
- Mascot Newsletter, February 2025:Mascot vs FragPipe: semi-tryptic TMTpro.Characterization of the noncanonical proteome.Mascot Server 3.1 is now available.#proteomics #MassSpechttps://www.matrixscience.com/nl/202502/newsletter.html
- Mascot Distiller can now use machine learning to boost sensitivity of protein quantitation. We processed a Thermo Orbitrap DDA LFQ benchmark data set, where Distiller now quantitates 14% more proteins at 1% FDR.#proteomics #MassSpechttps://www.matrixscience.com/blog/mascot-distiller-quantitates-more-proteins-with-machine-learning.html
- I am super excited to be an invited speaker at AUS-oMicS 2025 in beautiful Cairns. I'll be talking about my work using mass spectrometry to track pollutants in the environment and assess their effects on biological systems via #metabolomics. The oral abstract submission deadline has been extended until February 14th 2025. Submit yours today and register at https://www.ausomics.comSee you there!#TeamMassSpec #massspectrometry #massspec #ozchem #science #australia
- Do you use Thermo Proteome Discoverer with Mascot Server? Mascot Server 3.1 can now send results refined with machine learning directly to PD.PD 3.1: Identify over 20% more proteins.PD 2.4: Identify over 40% more proteins.#proteomics #MassSpechttps://www.matrixscience.com/blog/using-machine-learning-with-mascot-and-proteome-discoverer.html
- Agilent have published an application note for recommended MassHunter Qualitative Analysis settings when searching DDA peak lists with Mascot Server. We've added it to a new help page for Agilent instruments.https://www.matrixscience.com/help/instruments_agilent.html#proteomics #MassSpec
- Mascot newsletter, April 2025:ASMS User Meeting registration is now open.Competitive displacement of lipoprotein lipase by GPIHBP1.MS2PIP models for Thermo instruments.#proteomics #massspechttps://www.matrixscience.com/nl/202504/newsletter.html
- Sometimes you need a very large sequence database, e.g. search all proteobacteria proteins. Mascot Server has no size limit. Search a database of hundreds of millions of protein sequences without running out of resources.https://www.matrixscience.com/blog/big-databases-and-large-peak-lists.html#proteomics #MassSpec
- If your computer breaks down, do you know how to restore Mascot? As long as you regularly back up the right directories and files, it's straightfoward and fully described in the online help:https://www.matrixscience.com/help/disaster_recovery.html#proteomics #MassSpec
- Mascot Newsletter, March 2025:50% more identifications in Thermo Proteome Discoverer.Maternal immune activation imprints translational dysregulation.Mascot's ML adapter framework (US HUPO 2025 poster).#proteomics #MassSpechttps://www.matrixscience.com/nl/202503/newsletter.html
- Does anyone with a degree in chemistry have any idea what the authors mean with this? HOW did they end up with 5 different functional fractions? #chemistry #OC #HPLC #MassSpec
- German mass spectrometry society (DGMS) annual meeting starting this evening in #goettingen . Looking forward to three days of science and all things #massspec!
- Mascot Distiller provides DDA LFQ for Bruker, Sciex, Thermo and Waters instruments. Retention time alignment ("match between runs"); ion mobility (Bruker TIMS); fractionation; optimised peak detection; visualisation; and more.#proteomics #MassSpechttps://www.matrixscience.com/distiller.html
- Mascot Newsletter, February 2025:Mascot vs FragPipe: semi-tryptic TMTpro.Characterization of the noncanonical proteome.Mascot Server 3.1 is now available.#proteomics #MassSpechttps://www.matrixscience.com/nl/202502/newsletter.html
- Mascot Distiller can now use machine learning to boost sensitivity of protein quantitation. We processed a Thermo Orbitrap DDA LFQ benchmark data set, where Distiller now quantitates 14% more proteins at 1% FDR.#proteomics #MassSpechttps://www.matrixscience.com/blog/mascot-distiller-quantitates-more-proteins-with-machine-learning.html
- I am super excited to be an invited speaker at AUS-oMicS 2025 in beautiful Cairns. I'll be talking about my work using mass spectrometry to track pollutants in the environment and assess their effects on biological systems via #metabolomics. The oral abstract submission deadline has been extended until February 14th 2025. Submit yours today and register at https://www.ausomics.comSee you there!#TeamMassSpec #massspectrometry #massspec #ozchem #science #australia
- Do you use Thermo Proteome Discoverer with Mascot Server? Mascot Server 3.1 can now send results refined with machine learning directly to PD.PD 3.1: Identify over 20% more proteins.PD 2.4: Identify over 40% more proteins.#proteomics #MassSpechttps://www.matrixscience.com/blog/using-machine-learning-with-mascot-and-proteome-discoverer.html