- Today, Dr. David Wishart, a professor of biology AND computer science at University of Alberta won Canada’s highest honour for science & engineering, the Herzberg Gold Medal, for his pioneering work in metabolomics. Years ago, I worked with Dr. Wishart’s equally brilliant wife, Debby Waldman, when she wrote a humour column and book reviews for the Edmonton Journal. So it was a double thrill to be at the big NSERC reception, hosted by House of Commons Speaker Francis Scarpaleggia, to cheer on one of Edmonton’s scientific giants. Mazel tov to David and to the University of Alberta.. #yeg #UAlberta #Edmonton […]
- Project 14 here at the #BioHackEU25 will work to assess and improve the state of #mzTab-M for #Metabolomics over the next few days. Plus having fun meeting all the other attendees here near Berlin
- In or near Lexington KY, and have any research related to Cancer Metabolism you might want to get out there?The Cancer Metabolism Symposium is 2025-11-20, in person in the UKY Gatton Student Center. Free registration, easy to get outside for fresh air (I've attended other events there in person).Abstract submission deadline is Friday, 2025-10-31.https://medicine.uky.edu/centers/ccm/events#Bioinformatics #Metabolomics
- Next @denbi.bsky.social #training course: 🔬🚀 OpenMS Training & Open House 2025 in Toronto!📅 Nov 9 | 10AM–2PM | 🏛️ U of TorontoHands-on sessions in #proteomics & #metabolomics: OpenMS, pyOpenMS, WebApps, DIA, data viz & more.🤝 https://www.denbi.de/training-courses-2025/1965-openms-training-open-house-2025#OpenMS #MassSpec #Bioinformatics
- I was very pleased to be interviewed by The Analytical Scientist magazine about the Dark Metabolome. A term I think I was the first to define formally Read all about my thoughts on this somewhat contested concept – and what it means for the future of metabolomics as a field at https://theanalyticalscientist.com/issues/2025/articles/september/the-past-present-and-future-of-the-dark-metabolome/Shout out to Prof Julian Griffin for giving me a start in metabolomics back in (date redacted).#metabolomics #science #ozchem
- 🚀 Registration is open for EuBIC-MS Winter School 2026! ❄️🧬📍 Harrachov, Czechia🎙️ Keynotes | 🛠️ Workshops | 🤝 NetworkingSupported by @deNBI. This event is a must for anyone in #Bioinformatics, #Proteomics, or #Metabolomics.🔗 https://eubic-ms.org/events/2026-winter-school/#EuBIC2026 #MassSpec @eubic-ms.org
- Postdoctoral Analytical ChemistJohns Hopkins University Come join us at Johns Hopkins Malaria Research Institute as an #Analytical Chemistry PostdocSee the full job description on jobRxiv: https://jobrxiv.org/job/johns-hopkins-university-27778-postdoctoral-analytical-chemist/#AnalyticalMethodDevelopment #analyticalmethods #GCMS #LCMS #metabolomics #ScienceJobs #hiring #researchhttps://jobrxiv.org/job/johns-hopkins-university-27778-postdoctoral-analytical-chemist/?fsp_sid=4120
- I can be an idiot. 🤦♂️When trying to match chemicals by InChiKey across databases, it looks like I should be ignoring the last character, which is used to indicate charge (Neutral, Positive, Minus).Ugh. Well, that should help some of my analyses going forward.#Metabolomics #Bioinformatics
- Job AlertScientist / Postdoc (m/f/d): Preclinical Metabolomics Deadline: 2025-11-17 Location: Germany, Dortmund https://www.academiceurope.com/ads/scientist-postdoc-m-f-d-preclinical-metabolomics/#hiring #ISAS #biology #Metabolomics #Postdoc #CancerResearch #biochemistry #PrecisionMedicine
- Chemical representation standardization needed to generalize metabolic pathway involvement prediction across the Kyoto Encyclopedia of Genes and Genomes, Reactome, and MetaCyc knowledgebaseshttps://www.biorxiv.org/content/10.1101/2025.04.02.646918v1#Metabolomics #Bioinformatics #UsefulMachineLearning
- RE: https://mastodon.social/@rmflight/115380117804495322Related to this, another member of our research group has been working on predicting which pathways a given compound is likely associated with, just based on structure alone, learning from all of the current data available (see next post).Thankfully, I was able to generate mol files for all of my compounds, and they were able to put them through the prediction pipeline! Which should include all the original pathways they are in, as well as actual predictions.#Metabolomics #Bioinformatics
- Some days, I really, really dislike my job.Saliva metabolomics project, with a new core doing the metabolomics that I've never worked with their data.InChiKey seems to be the most reliable thing to work with, given I've gotten all the CheBI InChiKey's generated from their InChi strings (thanks OpenBabel!). And Reactome pathways has a mapping to CheBI, so great!But, but, the InChiKey given from core for Riboflavin, doesn't get me to the Reactome pathway!#Metabolomics #Bioinformatics
Mass spectrometry websites, social media, journal feeds, and other links and items of interest to the mass spectrometry community.
