Standard abbreviations

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Standard abbreviations PROTEOMICS, Volume 23, Issue 6, March 2023. March 15, 2023 https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/10.1002/pmic.202370044?af=R

A transformer architecture for retention time prediction in liquid chromatography mass spectrometry‐based proteomics

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. A transformer architecture for retention time prediction in liquid chromatography mass spectrometry‐based proteomics Abstract Accurate retention time prediction is important for spectral library-based analysis in data-independent acquisition mass spectrometry-based proteomics. The deep learning …

iTRAQ‐based proteomic analysis reveals proteins associated with cold stress response in two different populations of Manila clam (Ruditapes philippinarum)

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. iTRAQ‐based proteomic analysis reveals proteins associated with cold stress response in two different populations of Manila clam (Ruditapes philippinarum) Abstract Water temperature is one of the key environmental factors for marine ectotherms and …

Identifying dynamical persistent biomarker structures for rare events using modern integrative machine learning approach

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Identifying dynamical persistent biomarker structures for rare events using modern integrative machine learning approach Abstract The evolution of omics and computational competency has accelerated discoveries of the underlying biological processes in an unprecedented …

A gas phase fractionation acquisition scheme integrating ion mobility for rapid diaPASEF library generation

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. A gas phase fractionation acquisition scheme integrating ion mobility for rapid diaPASEF library generation Abstract Data independent acquisition (DIA/SWATH) MS is a primary strategy in quantitative proteomics. diaPASEF is a recent adaptation using …

Solvent‐induced proteome profiling for proteomic quantitation and target discovery of small molecular drugs

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Solvent‐induced proteome profiling for proteomic quantitation and target discovery of small molecular drugs Abstract Target identification by modification-free proteomic approaches can potentially reveal the pharmacological mechanism of small molecular compounds. By combining the …

Identification of proteoforms by top‐down proteomics using two‐dimensional low/low pH reversed‐phase liquid chromatography‐mass spectrometry

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Identification of proteoforms by top‐down proteomics using two‐dimensional low/low pH reversed‐phase liquid chromatography‐mass spectrometry Abstract In top-down (TD) proteomics, efficient proteoform separation is crucial to reduce the sample complexity and increase the depth …

Integrated tandem affinity protein purification using the polyhistidine plus extra 4 amino acids (HiP4) tag system

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Integrated tandem affinity protein purification using the polyhistidine plus extra 4 amino acids (HiP4) tag system Abstract Peptide tag systems are a robust biophysical and biochemical method that is widely used for protein …

Standard abbreviations

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Standard abbreviations PROTEOMICS, Volume 23, Issue 5, March 2023. March 2, 2023 https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/10.1002/pmic.202370034?af=R

Bioprospecting the American Alligator Peptidome for antiviral peptides against Venezuelan equine encephalitis virus

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Bioprospecting the American Alligator Peptidome for antiviral peptides against Venezuelan equine encephalitis virus Abstract The innate immune protection provided by cationic antimicrobial peptides (CAMPs) has been shown to extend to antiviral activity, with …

Proteomic and phosphoproteomic landscape of salivary extracellular vesicles to assess OSCC therapeutical outcomes

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Proteomic and phosphoproteomic landscape of salivary extracellular vesicles to assess OSCC therapeutical outcomes Abstract Circulating extracellular vesicles (EVs) have emerged as an appealing source for surrogates to evaluate the disease status. Herein, we …

Proteomics‐based scoring of cellular response to stimuli for improved characterization of signaling pathway activity

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Proteomics‐based scoring of cellular response to stimuli for improved characterization of signaling pathway activity Abstract Omics technologies focus on uncovering the complex nature of molecular mechanisms in cells and organisms, including biomarkers and …

Isobaric labeling‐based quantitative proteomics of FACS‐purified immune cells and epithelial cells from the intestine of Crohn’s disease patients reveals proteome changes of potential importance in disease pathogenesis

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Isobaric labeling‐based quantitative proteomics of FACS‐purified immune cells and epithelial cells from the intestine of Crohn’s disease patients reveals proteome changes of potential importance in disease pathogenesis Abstract Crohn’s disease (CD) is a …

Identifying dynamical persistent biomarker structures for rare events using modern integrative machine learning approach

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Identifying dynamical persistent biomarker structures for rare events using modern integrative machine learning approach Abstract The evolution of omics and computational competency has accelerated discoveries of the underlying biological processes in an unprecedented …

Solvent‐induced proteome profiling for proteomic quantitation and target discovery of small molecular drugs

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Solvent‐induced proteome profiling for proteomic quantitation and target discovery of small molecular drugs Abstract Target identification by modification-free proteomic approaches can potentially reveal the pharmacological mechanism of small molecular compounds. By combining the …

Applying single‐cell highly multiplexed secretome proteomics to characterize immunotherapeutic products and predict clinical responses

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Applying single‐cell highly multiplexed secretome proteomics to characterize immunotherapeutic products and predict clinical responses Abstract Genetically and phenotypically identical immune cell populations can be highly heterogenous in terms of their immune functions and …

Proteomic identification of intracellular vesicle trafficking and protein glycosylation requirements for lumen inflation in Ciona notochord

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Proteomic identification of intracellular vesicle trafficking and protein glycosylation requirements for lumen inflation in Ciona notochord Abstract Lumen formation and inflation are crucial steps for tubular organ morphogenesis, yet the underling mechanism remains …

Identification of proteoforms by top‐down proteomics using two‐dimensional low/low pH reversed‐phase liquid chromatography‐mass spectrometry

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Identification of proteoforms by top‐down proteomics using two‐dimensional low/low pH reversed‐phase liquid chromatography‐mass spectrometry Abstract In top-down proteomics, efficient proteoform separation is crucial to reduce the sample complexity and increase the depth of …

Genetic and epigenetic control of the plant metabolome

Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Genetic and epigenetic control of the plant metabolome Abstract Plant metabolites are mainly produced through chemical reactions catalysed by enzymes encoded in the genome. Mutations in enzyme-encoding or transcription factor-encoding genes can alter …