[ASAP] OpenCustomDB: Integration of Unannotated Open Reading Frames and Genetic Variants to Generate More Comprehensive Customized Protein Databases

Journal of Proteome Research

Journal of Proteome Research: Latest Articles (ACS Publications)

latest articles published in Journal of Proteome Research

[ASAP] OpenCustomDB: Integration of Unannotated Open Reading Frames and Genetic Variants to Generate More Comprehensive Customized Protein Databases

TOC Graphic

Journal of Proteome Research
DOI: 10.1021/acs.jproteome.3c00054

Noé Guilloy, Marie A. Brunet, Sébastien Leblanc, Jean-François Jacques, Marie-Pierre Hardy, Grégory Ehx, Joël Lanoix, Pierre Thibault, Claude Perreault, and Xavier Roucou
March 24, 2023
http://dx.doi.org/10.1021/acs.jproteome.3c00054

[ASAP] Age-Dependent Serum Volatilomics of Milk and Yogurt Intake: A Randomized Crossover Study in Healthy Young and Older Men

Journal of Proteome Research

Journal of Proteome Research: Latest Articles (ACS Publications)

latest articles published in Journal of Proteome Research

[ASAP] Age-Dependent Serum Volatilomics of Milk and Yogurt Intake: A Randomized Crossover Study in Healthy Young and Older Men

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Journal of Proteome Research
DOI: 10.1021/acs.jproteome.2c00674

HéleĢ€ne Yi Meng, Jinyoung Kim, Charlotte Fleuti, Pascal Fuchsmann, Sergio Polakof, Dominique Dardevet, Corinne Marmonier, Kathryn J. Burton-Pimentel, Ulrich Bütikofer, and Guy VergeĢ€res
March 24, 2023
http://dx.doi.org/10.1021/acs.jproteome.2c00674

[ASAP] Determination of Binding Sites on Trastuzumab and Pertuzumab to Selective Affimers Using Hydrogen–Deuterium Exchange Mass Spectrometry

Journal of The American Society for Mass Spectrometry

Journal of the American Society for Mass Spectrometry: Latest Articles (ACS Publications)

latest articles published in Journal of the American Society for Mass Spectrometry

[ASAP] Determination of Binding Sites on Trastuzumab and Pertuzumab to Selective Affimers Using Hydrogen–Deuterium Exchange Mass Spectrometry

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Journal of the American Society for Mass Spectrometry
DOI: 10.1021/jasms.3c00069

Oladapo Olaleye, Christian Graf, Baubek Spanov, Natalia Govorukhina, Matthew R. Groves, Nico C. van de Merbel, and Rainer Bischoff
March 24, 2023
http://dx.doi.org/10.1021/jasms.3c00069

Equilibrium isotope fractionation factors of H exchange between steam and soil clay fractions

Rapid Communications in Mass Spectrometry

Wiley: Rapid Communications in Mass Spectrometry: Table of Contents

Table of Contents for Rapid Communications in Mass Spectrometry. List of articles from both the latest and EarlyView issues.

Equilibrium isotope fractionation factors of H exchange between steam and soil clay fractions

Rationale

Steam equilibration overcomes the problem of the traditional measurements of H isotope compositions, which leave an arbitrary amount of adsorbed water in the sample, by controlling for the entire exchangeable H pool, including adsorbed water and hydroxyl-H. However, the use of steam equilibration to determine nonexchangeable stable H isotope compositions in environmental media (expressed as Ī“
2Hn values) by mathematically eliminating the influence of exchangeable H after sample equilibration with waters of known H-isotopic composition requires the knowledge of the equilibrium isotope fractionation factor between steam-H and exchangeable H of the sample (αex-w), which is frequently unknown.

Methods

We developed a new method to determine the αex-w values for clay minerals, topsoil clay fractions, and mica by manipulating the contributions of exchangeable H to the total H pool via different degrees of post-equilibration sample drying. We measured the Γ
2H values of steam-equilibrated mineral and soil samples using elemental analyzer-pyrolysis-isotope ratio mass spectrometry.

Results

The αex-w values of seven clay minerals ranged from 1.071 to 1.140, and those of 19 topsoil clay fractions ranged from 0.885 to 1.216. The αex-w value of USGS57 biotite, USGS58 muscovite, and of cellulose was 0.965, 0.871, and 1.175, respectively. The method did not work for kaolinite, because its small exchangeable H pool did not respond to the selected drying conditions. Structurally different mineral groups such as two- and three-layer clay minerals or mica showed systematically different αex-w values. The αex-w value of the topsoil clay fractions correlated with the soil clay content (rĀ =Ā 0.63, PĀ = 0.004), the local mean annual temperature (r = 0.68, PĀ = 0.001), and the Ī“
2H values of local precipitation (r = 0.72, PĀ < 0.001), likely to reflect the different clay mineralogy under different weathering regimes.

Conclusions

Our new αex-w determination method yielded realistic results in line with the few previously published values for cellulose. The determined αex-w values were similar to the widely assumed values of 1.00–1.08 in the literature, suggesting that the adoption of one of these values in steam equilibration approaches is appropriate.

Stefan Merseburger,
Arnim Kessler,
Yvonne Oelmann,
Wolfgang Wilcke
March 24, 2023
https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/10.1002/rcm.9499?af=R

Inadequate Definition of the Limit of Quantification Applied for the Quantification of Perfluoroalkyl Substances in Food by LC‐MS/MS May Compromise the Reliability of the Data Requested by the European Regulation

Rapid Communications in Mass Spectrometry

Wiley: Rapid Communications in Mass Spectrometry: Table of Contents

Table of Contents for Rapid Communications in Mass Spectrometry. List of articles from both the latest and EarlyView issues.

Inadequate Definition of the Limit of Quantification Applied for the Quantification of Perfluoroalkyl Substances in Food by LC‐MS/MS May Compromise the Reliability of the Data Requested by the European Regulation

Liquid chromatography tandem mass spectrometry (LC-MS/MS) is a widespread technology used for the quantitative determination of per- and polyfluoroalkyl substances (PFAS) in foodstuffs. Specifically, LC-MS/MS offers attractive performance combining the sensitivity and selectivity required by the European Union for testing perfluorooctane sulfonic acid (PFOS), perfluorooctanoic acid (PFOA), perfluorononanoic acid (PFNA) and perfluorohexane sulfonic acid (PFHxS) with maximum limits of quantification (LOQs) in the sub part-per-billion (μg/kg) or the part-per-trillion (ng/kg) domains. In this article we highlight the important diversity in LOQ definitions applied in LC-MS/MS methods described in the literature that raise concerns about the capability of some of those to generate reliable data requested by the European regulation. Here, we point the risk of false response or misquantification if criteria for assessing LOQ suffer from a lack of rigor. We emphasize the need to use PFAS-free samples spiked with the analyte(s) of interest and the application of identification criteria according to official documents for a sound measurement of the LOQ.

Thierry Delatour,
Xanthippe Theurillat,
BjĆørn Eriksen,
Claudia Mujahid,
Pascal Mottier
March 24, 2023
https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/10.1002/rcm.9507?af=R

Using interactive platforms to encode, manage and explore immune-related adverse outcome pathways

BioRxiv

bioRxiv Subject Collection: Systems Biology
This feed contains articles for bioRxiv Subject Collection "Systems Biology"

Using interactive platforms to encode, manage and explore immune-related adverse outcome pathways

We address the need for modelling and predicting adverse outcomes in immunotoxicology to improve non-clinical assessments of immunomodulatory therapy safety and efficacy. The integrated approach includes, first, the adverse outcome pathway concept established in the toxicology field, and, second, the systems medicine disease map approach for describing molecular mechanisms involved in a particular pathology. The proposed systems immunotoxicology workflow is demonstrated with CAR T cell treatment as a use case. To this end, the linear adverse outcome pathway (AOP) is expanded into a molecular interaction model in standard systems biology formats. Then it is shown how knowledge related to immunotoxic events can be integrated, encoded, managed and explored to benefit the research community. The map is accessible online via the MINERVA Platform for browsing, commenting and data visualisation (https://minerva.pages.uni.lu). Our work transforms a graphical illustration of an AOP into a digitally structured and standardised form, featuring precise and controlled vocabulary and supporting reproducible computational analyses. Because of annotations to source literature and databases, the map can be further expanded to match the evolving knowledge and research questions.
Mazein, A., Shoaib, M., Alb, M., Sakellariou, C., Sommer, C., Sewald, K., Reiche, K., Gogesch, P., Roser, L. A., Ortega Iannazzo, S., Sheth, S., Schiffmann, S., Waibler, Z., Neuhaus, V., Dehmel, S., Satagopam, V., Schneider, R., Ostaszewski, M., Gu, W.
March 24, 2023
http://biorxiv.org/cgi/content/short/2023.03.21.533620v1?rss=1

standard-GEM: standardization of open-source genome-scale metabolic models

BioRxiv

bioRxiv Subject Collection: Systems Biology
This feed contains articles for bioRxiv Subject Collection "Systems Biology"

standard-GEM: standardization of open-source genome-scale metabolic models

The field of metabolic modelling at the genome-scale continues to grow with more models being created and curated. This comes with an increasing demand for adopting common principles regarding transparency and versioning, in addition to standardisation efforts regarding file formats, annotation and testing. Here, we present a standardised template for git-based and GitHub-hosted genome-scale metabolic models (GEMs) supporting both new models and curated ones, following FAIR principles (findability, accessibility, interoperability, and reusability), and incorporating best-practices. Standard-GEM facilitates the reuse of GEMs across web services and platforms in the metabolic modelling field and enables automatic validation of GEMs. The use of this template for new models, and its adoption for existing ones, paves the way for increasing model quality, openness, and accessibility with minimal effort.
Anton, M., Almaas, E., Benfeitas, R., Benito-Vaquerizo, S., Blank, L. M., Dräger, A., Hancock, J. M., Kittikunapong, C., König, M., Li, F., Liebal, U. W., Lu, H., Ma, H., Mahadevan, R., Mardinoglu, A., Nielsen, J., Nogales, J., Pagni, M., Papin, J. A., Patil, K. R., Price, N. D., Robinson, J. L., Sanchez, B. J., Suarez Diez, M., Sulheim, S., Svensson, L. T., Teusink, B., Vongsangnak, W., Wang, H., Zeidan, A. A., Kerkhoven, E. J.
March 24, 2023
http://biorxiv.org/cgi/content/short/2023.03.21.512712v1?rss=1

Modeling transcriptional regulation of the cell cycle using a novel cybernetic-inspired approach

BioRxiv

bioRxiv Subject Collection: Systems Biology
This feed contains articles for bioRxiv Subject Collection "Systems Biology"

Modeling transcriptional regulation of the cell cycle using a novel cybernetic-inspired approach

Quantitative understanding of cellular processes, such as cell cycle and differentiation, is impeded by various forms of complexity ranging from myriad molecular players and their multilevel regulatory interactions, cellular evolution with multiple intermediate stages, lack of elucidation of cause-effect relationships among the many system players, and the computational complexity associated with the profusion of variables and parameters. In this paper, we present an elegant modeling framework based on the cybernetic concept that biological regulation is inspired by objectives embedding entirely novel strategies for dimension reduction, process stage specification through the system dynamics, and innovative causal association of regulatory events with the ability to predict the evolution of the dynamical system. The elementary step of the modeling strategy involves stage-specific objective functions that are computationally-determined from experiments, augmented with dynamical network computations involving end point objective functions, mutual information, change point detection, and maximal clique centrality. We demonstrate the power of the method through application to the mammalian cell cycle, which involves thousands of biomolecules engaged in signaling, transcription, and regulation. Starting with a fine-grained transcriptional description obtained from RNA sequencing measurements, we develop an initial model, which is then dynamically modeled using the cybernetic-inspired method (CIM), utilizing the strategies described above. The CIM is able to distill the most significant interactions from a multitude of possibilities. In addition to capturing the complexity of regulatory processes in a mechanistically causal and stage-specific manner, we identify the functional network modules, including novel cell cycle stages. Our model is able to predict future cell cycles consistent with experimental measurements. We posit that this state-of-the-art framework has the promise to extend to the dynamics of other biological processes, with a potential to provide novel mechanistic insights.
Raja, R., Khanum, S., Aboulmouna, L., Maurya, M. R., Gupta, S., Subramaniam, S., Ramkrishna, D.
March 24, 2023
http://biorxiv.org/cgi/content/short/2023.03.21.533676v1?rss=1

Compromised beta-cell identity in type 2 diabetes

BioRxiv

bioRxiv Subject Collection: Systems Biology
This feed contains articles for bioRxiv Subject Collection "Systems Biology"

Compromised beta-cell identity in type 2 diabetes

Compromised beta-cell identity is emerging as an important contributor of beta-cell dysfunction in type 2 diabetes (T2D). Several studies suggest that hyperglycemia induces the inactivation of transcription factors involved in mature beta-cell identity. More specifically, chronic hyperglycemia leads to the downregulation of PDX1 and MAFA, two important beta-cell identity transcription factors and regulators of insulin promoter activity. Regulation of these transcription factors depends on interactions between multiple signaling cascades and processes driven by complex non-linear dynamics and taking place in different cellular compartments. To better understand these non-linear dynamics, we developed an integrated mathematical model of the underlying mechanisms regulating these key transcription factors. Our model was able to reproduce experimentally measured variations in the levels of PDX1, MAFA and insulin mRNA under different glucose concentrations. We used this model to simulate scenarios that could allow to restore PDX1 and MAFA levels and therefore insulin gene expression. From these simulations, FOXO1 emerged as an important target for the restoration of beta-cell identity.
Dutta, P., Merabet, N., Quax, R., Carlotti, F., Sloot, P. M. A.
March 24, 2023
http://biorxiv.org/cgi/content/short/2023.03.20.533468v1?rss=1

Learning Perturbation-specific Cell Representations for Prediction of Transcriptional Response across Cellular Contexts

BioRxiv

bioRxiv Subject Collection: Systems Biology
This feed contains articles for bioRxiv Subject Collection "Systems Biology"

Learning Perturbation-specific Cell Representations for Prediction of Transcriptional Response across Cellular Contexts

Pre-clinical and clinical scientific endeavours provide complementary perspectives on fundamental biological processes of translational value. Harnessing the information value on the totality of such knowledge requires novel approaches to integrate across the breadth of experimental space. High-throughput screens are often the first step on this bridge to the patient. However, their representative capacity to encompass all the cellular contexts encountered in a patient are often limited due to experimental constraints. Thus, we present PerturbX, a new deep learning model to predict transcriptional responses to chemical or genetic perturbations in unobserved cellular contexts, and to uncover interpretable factors of variation associated with the predicted response. PerturbX can be applied in both an unimodal or multimodal setting. We believe that our proposed approach has the ability to inform novel biomarker discovery and contribute to a redefinition of the drug development pipeline.
Keinan, G., Sayal, K., Gonen, A., Zhu, J., Granovsky, L., England, J.
March 24, 2023
http://biorxiv.org/cgi/content/short/2023.03.20.533433v1?rss=1

[ASAP] Collision Induced Dissociation of Deprotonated Isoxazole and 3‑Methyl Isoxazole via Direct Chemical Dynamics Simulations

Journal of The American Society for Mass Spectrometry

Journal of the American Society for Mass Spectrometry: Latest Articles (ACS Publications)

latest articles published in Journal of the American Society for Mass Spectrometry

[ASAP] Collision Induced Dissociation of Deprotonated Isoxazole and 3‑Methyl Isoxazole via Direct Chemical Dynamics Simulations

TOC Graphic

Journal of the American Society for Mass Spectrometry
DOI: 10.1021/jasms.2c00366

Himani Priya and Manikandan Paranjothy
March 23, 2023
http://dx.doi.org/10.1021/jasms.2c00366

Rapid on‐site detection of persistent organic pollutants using multi‐walled carbon nanotube‐modified paper spray ionization and a miniature mass spectrometer

Rapid Communications in Mass Spectrometry

Wiley: Rapid Communications in Mass Spectrometry: Table of Contents

Table of Contents for Rapid Communications in Mass Spectrometry. List of articles from both the latest and EarlyView issues.

Rapid on‐site detection of persistent organic pollutants using multi‐walled carbon nanotube‐modified paper spray ionization and a miniature mass spectrometer

RATIONALE

Rapid on-site detection of persistent organic pollutants (POPs) is highly desirable for environmental protection.

METHODS

Herein, a rapid on-site analytical workflow was developed for the investigation of polycyclic aromatic hydrocarbons (PAHs) and perfluorinated compounds (PFCs) using multi-walled carbon nanotube (MWCNT)-modified paper spray ionization (PSI) coupled with a miniature ion trap mass spectrometer. Critical parameters regarding PSI and miniature mass spectrometry analysis were optimized.

RESULTS

The analytical performance of the developed method was evaluated under optimized conditions, obtaining a short analysis duration of less than 1 min, sufficient linearity with correlation coefficients greater than 0.99, acceptable recovery rates of 93.1–105.8% with relative standard deviations of between 3.5–10.3%, and reasonable sensitivity with limits of detection and quantitation of 2–200 μg/L and 5–500 μg/L, respectively.

CONCLUSIONS

Considering these aspects, the present approach demonstrated a promising solution for rapid on-site detection of emerging POPs.

Xiangyu Guo,
Junfang Li,
Hua Bai,
Qiang Ma
March 23, 2023
https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/10.1002/rcm.9509?af=R

EI‐MS fragmentation routes of CWC‐related organoarsenic compounds: The electron ionization and DFT studies

Rapid Communications in Mass Spectrometry

Wiley: Rapid Communications in Mass Spectrometry: Table of Contents

Table of Contents for Rapid Communications in Mass Spectrometry. List of articles from both the latest and EarlyView issues.

EI‐MS fragmentation routes of CWC‐related organoarsenic compounds: The electron ionization and DFT studies

RATIONALE

For unambiguous identification of Chemical Weapons Convention-related chemicals in environmental and biological samples, access to mass spectra and expertise in spectral interpretation is required. As of today, there is no mass spectrum available for dialkyl alkylarsonodithioites in the literature. Therefore, it is essential to obtain spectral information about these compounds.

METHODS

The CWC-related organoarsenic compounds were synthesized and analyzed by GC-MS, and their retention index (RI) was calculated by Van Den Dool’s method. The relationship between RI and DFT-calculated polarizability (āŗ) and molecular weight was also studied. Electron ionization (EI) mode was used to investigate the general fragmentation patterns of the synthesized compounds. A DFT analysis of some major fragment ions was performed in order to confirm the fragmentation pathways.

RESULTS

A linear relationship between RI and āŗ is observed. The mass spectra of compounds 5-7 are affected by alkyl groups on sulfur and arsenic atom. The molecular ion of compounds 5-7 can be observed in their EI-MS with relatively good abundance. EI-MS studies revealed some interesting fragmentation pathways, such as the formation of arsenic analogue of benzilic and tropylium in EI-MS of chemicals 6.

CONCLUSIONS

By analyzing the mass spectra and RI values, it is possible to detect CWC-related chemicals in aqueous, blood, and urine samples during an on-site or off-site inspection.

Masomeh Eskandari,
Sajjad Mousavi Faraz,
Seyed Esmaeil Hosseini,
Shahram Moradi,
Hamid Saeidian
March 23, 2023
https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/10.1002/rcm.9511?af=R

Examination of Electronically Mismatched Diels–Alder Reaction by Online Mass Spectrometry

Rapid Communications in Mass Spectrometry

Wiley: Rapid Communications in Mass Spectrometry: Table of Contents

Table of Contents for Rapid Communications in Mass Spectrometry. List of articles from both the latest and EarlyView issues.

Examination of Electronically Mismatched Diels–Alder Reaction by Online Mass Spectrometry

Rationale

Electronically mismatched Diels–Alder reactions have gained much interests as an alternative pathway for C-C bond formation. To faciliate the development of facile organic transformations, mechanistic investigations are required. Spectroscopic methods (NMR, EPR and UV-Vis) are normally adopted for mechainism examinations, but further improvements on direct obtaining of structural information of short-lived intermediates are encouraged. Herein, an electronically mismatched Diels–Alder reaction between indole and 1,3-cyclohexadiene (1,3-CHD) was studied by an in situ electrospray ionization mass spectrometry (in-situ MS). Based on the direct sampling and detection of the in-situ MS without sample pre-treatment, the structures and dynamics of important intermediates were on-line examined.

Methods

A syringe-based photocatalytic reactor and in-situ AMS evaluation system was constructed for mechanism studies. The role of oxygen was confirmed via control reaction employed in the N2-bubbled system. The stepwise cation radical-based pathway and the [2+2] cycloaddition process were determined through a series of experiments, including solvent evaluation, MS/MS experiments and dynamic monitoring.

Results

The dependence of the reaction on solvent polarity demonstrated that the reaction occurs via the formation of cation radicals, which were captured, identified and dynamically monitored via in situ ESI MS. Without pre-separation, the intermediate of [2+2] cycloaddition was identifiedand the cycloaddition process is thereby determined to be the combination of [4+2] cycloaddition and [2+2] cycloaddition. In addition, oxygen was proved to act as an electron mediator for both catalyst Ru (bpz)3(PF6)2 and radical cations.

Conclusions

The mechanism of electronically mismatched Diels–Alder reaction was successfully deduced by in-situ MS associated with a syringe-based photocatalytic reactor. The structures and dynamics of cation radicals, the effect of O2 for the reaction and the detailed process of [2+2] cycloaddition have been well demonstrated. This work could not only promote the understanding and development of facile photocatalytic transformations, but also enlarge the application of AMS in on-line monitoring.

Jianghui Sun,
Mengyu Cao,
Xiyang Ge,
Jin Ouyang,
Na Na
March 23, 2023
https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/10.1002/rcm.9510?af=R

Proteomic analysis of sialoliths from calcified, lipid and mixed groups as a source of potential biomarkers of deposit formation in the salivary glands

Clinical Proteomics

Most Recent Articles: Clinical Proteomics

Most Recent Articles: Clinical Proteomics

Proteomic analysis of sialoliths from calcified, lipid and mixed groups as a source of potential biomarkers of deposit formation in the salivary glands

Salivary stones, also known as sialoliths, are formed in a pathological situation in the salivary glands. So far, neither the mechanism of their formation nor the factors predisposing to their formation are kn…

Natalia Musiał, Aleksandra Bogucka, Dmitry Tretiakow, Andrzej Skorek, Jacek Ryl and Paulina Czaplewska
March 23, 2023
https://clinicalproteomicsjournal.biomedcentral.com/articles/10.1186/s12014-023-09402-3

Identification of novel smORFs and microprotein acting in response to rehydration of Nostoc flagelliforme

Proteomics (Wiley)

Wiley: PROTEOMICS: Table of Contents

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Identification of novel smORFs and microprotein acting in response to rehydration of Nostoc flagelliforme

Abstract

Nostoc flagelliforme, a terrestrial cyanobacterium spread throughout arid and semi-arid areas, has been long known for its outstanding adaptability to extremely dry conditions. This microorganism is able to recover biological activities within hours after months of anhydrobiosis state, attracting investigation through proteomic analysis. Except for canonical proteome, microproteins encoded by small ORFs (smORFs) have recently been regarded as indispensable participants in metabolic processes. However, the involvement of smORFs in Nostoc flagelliforme remains unknown. Here we first constructed a smORF database in Nostoc flagelliforme using bioinformatic prediction, resulting in 6072 novel smORFs. Then LS-MS/MS analysis was applied to identify expression patterns of microproteins and seek smORFs and their encoded microprotein playing a role during rehydration. In total, 18 novel microproteins were mined based on a smORF searching strategy combined with three proteomic assays, of which five were annotated as ribosomal proteins, one as RNA polymerase subunit, and one as acetohydroxy acid isomeroreductase. We also suggested the possible functions of smORFs according to their expression pattern and discovered two neighboring and homologous smORFs. All these results will expand our knowledge of smORFs-encoded microproteins and their relation to the stress response of extremophilic microorganisms.

This article is protected by copyright. All rights reserved

Zhao Peng,
Aishuake Huwanixi,
Cuihong Wan
March 23, 2023
https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/10.1002/pmic.202200473?af=R

[ASAP] Wood from Hardwood Angiosperms and Coniferous Gymnosperms Shows Distinctive Lignin Peaks in Direct Analysis in Real Time (DART) Mass Spectra

Journal of The American Society for Mass Spectrometry

Journal of the American Society for Mass Spectrometry: Latest Articles (ACS Publications)

latest articles published in Journal of the American Society for Mass Spectrometry

[ASAP] Wood from Hardwood Angiosperms and Coniferous Gymnosperms Shows Distinctive Lignin Peaks in Direct Analysis in Real Time (DART) Mass Spectra

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Journal of the American Society for Mass Spectrometry
DOI: 10.1021/jasms.2c00347

Robert B. Cody, Edgard O. Espinoza, Erin R. Price, and Pamela J. McClure
March 22, 2023
http://dx.doi.org/10.1021/jasms.2c00347

[ASAP] PatternLab V Handles Multiplex Spectra in Shotgun Proteomic Searches and Increases Identification

Journal of The American Society for Mass Spectrometry

Journal of the American Society for Mass Spectrometry: Latest Articles (ACS Publications)

latest articles published in Journal of the American Society for Mass Spectrometry

[ASAP] PatternLab V Handles Multiplex Spectra in Shotgun Proteomic Searches and Increases Identification

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Journal of the American Society for Mass Spectrometry
DOI: 10.1021/jasms.3c00063

Milan A. Clasen, Marlon D. M. Santos, Louise Ulrich Kurt, Juliana Fischer, Amanda C. Camillo-Andrade, Lucas Albuquerque Sales, Tatiana de Arruda Campos Brasil de Souza, Diogo Borges Lima, Fabio C. Gozzo, Richard Hemmi Valente, Rosario Duran, Valmir C. Barbosa, and Paulo C. Carvalho
March 22, 2023
http://dx.doi.org/10.1021/jasms.3c00063

[ASAP] Normal Alpha-1-Antitrypsin Variants Display in Serum Allele-Specific Protein Levels

Journal of Proteome Research

Journal of Proteome Research: Latest Articles (ACS Publications)

latest articles published in Journal of Proteome Research

[ASAP] Normal Alpha-1-Antitrypsin Variants Display in Serum Allele-Specific Protein Levels

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Journal of Proteome Research
DOI: 10.1021/acs.jproteome.2c00833

Shelley Jager, Dario A. T. Cramer, and Albert J. R. Heck
March 22, 2023
http://dx.doi.org/10.1021/acs.jproteome.2c00833