Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Proteomic identification of intracellular vesicle trafficking and protein glycosylation requirements for lumen inflation in Ciona notochord Abstract Lumen formation and inflation are crucial steps for tubular organ morphogenesis, yet the underling mechanism remains …
Author Archives: Kermit Murray
Comparative proteome profiling of fusarium chlamydosporum and elucidation of pigment biosynthetic pathway under nitrogen stress
Journal of Proteomics ScienceDirect Publication: Journal of Proteomics ScienceDirect RSS Comparative proteome profiling of fusarium chlamydosporum and elucidation of pigment biosynthetic pathway under nitrogen stress Publication date: 15 April 2023 Source: Journal of Proteomics, Volume 277 Author(s): Tessy Anu Thomas, Sharmila Tirumale February 25, 2023 https://www.sciencedirect.com/science/article/pii/S1874391923000404?dgcid=rss_sd_all
To explore the regulatory effect of Buyang Huanwu Decoction on cerebral infarction based on quantitative proteomics
Journal of Proteomics ScienceDirect Publication: Journal of Proteomics ScienceDirect RSS To explore the regulatory effect of Buyang Huanwu Decoction on cerebral infarction based on quantitative proteomics Publication date: 15 April 2023 Source: Journal of Proteomics, Volume 277 Author(s): Ying Li, Lan Miao, Rongjuan Guo, Lijuan He, Mingqian Sun, Yinghong Pan, Li Lin, Junguo Ren, Jianxun …
Multi-view learning to unravel the different levels underlying hepatitis B vaccine response
BioRxiv bioRxiv Subject Collection: Systems Biology This feed contains articles for bioRxiv Subject Collection "Systems Biology" Multi-view learning to unravel the different levels underlying hepatitis B vaccine response Background: The high complexity of biological systems arises from the large number of spatially and functionally overlapping interconnected components constituting them. The immune system, which is built …
Exploring tumor-normal cross-talk with TranNet: role of the environment in tumor progression
BioRxiv bioRxiv Subject Collection: Systems Biology This feed contains articles for bioRxiv Subject Collection "Systems Biology" Exploring tumor-normal cross-talk with TranNet: role of the environment in tumor progression There is a growing awareness that tumor-adjacent normal tissues used as control samples in cancer studies do not represent fully healthy tissues. Instead, they are intermediates between …
A compact model for cold tolerance entrainment based on the ICE1-CBF-COR pathway in plants
BioRxiv bioRxiv Subject Collection: Systems Biology This feed contains articles for bioRxiv Subject Collection "Systems Biology" A compact model for cold tolerance entrainment based on the ICE1-CBF-COR pathway in plants Most temperate plants can tolerate both chilling and freezing temperatures. Plants have developed self-defense mechanisms to perceive cold signal, trigger the cold tolerance for the …
[ASAP] Comprehensive Lipidomic Workflow for Multicohort Population Phenotyping Using Stable Isotope Dilution Targeted Liquid Chromatography-Mass Spectrometry
Journal of Proteome Research Journal of Proteome Research: Latest Articles (ACS Publications) latest articles published in Journal of Proteome Research [ASAP] Comprehensive Lipidomic Workflow for Multicohort Population Phenotyping Using Stable Isotope Dilution Targeted Liquid Chromatography-Mass Spectrometry Journal of Proteome Research DOI: 10.1021/acs.jproteome.2c00682 Monique J. Ryan, Alanah Grant-St James, Nathan G. Lawler, Mark W. Fear, Edward …
Genetic and epigenetic control of the plant metabolome
Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Genetic and epigenetic control of the plant metabolome Abstract Plant metabolites are mainly produced through chemical reactions catalysed by enzymes encoded in the genome. Mutations in enzyme-encoding or transcription factor-encoding genes can alter …
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Identification of proteoforms by topâdown proteomics using twoâdimensional low/low pH reversedâphase liquid chromatographyâmass spectrometry
Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Identification of proteoforms by topâdown proteomics using twoâdimensional low/low pH reversedâphase liquid chromatographyâmass spectrometry Abstract In top-down proteomics, efficient proteoform separation is crucial to reduce the sample complexity and increase the depth of …
Comparative gene regulatory network analysis in Alzheimer’s disease and major depressive disorder
BioRxiv bioRxiv Subject Collection: Systems Biology This feed contains articles for bioRxiv Subject Collection "Systems Biology" Comparative gene regulatory network analysis in Alzheimer’s disease and major depressive disorder Major depressive disorder and Alzheimer’s disease are two prevalent and devastating disorders that still lack effective treatment. Despite distinct disease phenotypes, these two disorders are characterized by …
Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease
BioRxiv bioRxiv Subject Collection: Systems Biology This feed contains articles for bioRxiv Subject Collection "Systems Biology" Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease Single-cell atlases across conditions are essential in the characterization of human disease. In these complex experimental designs, patient samples are profiled across distinct cell-types and clinical conditions …
Transkingdom Network Analysis (TkNA): a systems approach inferring causal factors underlying host-microbiota interactions.
BioRxiv bioRxiv Subject Collection: Systems Biology This feed contains articles for bioRxiv Subject Collection "Systems Biology" Transkingdom Network Analysis (TkNA): a systems approach inferring causal factors underlying host-microbiota interactions. Technological advances have generated tremendous amounts of high-throughput omics data. Integrating data from multiple cohorts and/or several omics types from new and previously published studies can …
Identification of PRTN3 as a novel biomarker for the diagnosis of early gastric cance
Journal of Proteomics ScienceDirect Publication: Journal of Proteomics ScienceDirect RSS Identification of PRTN3 as a novel biomarker for the diagnosis of early gastric cance Publication date: 15 April 2023 Source: Journal of Proteomics, Volume 277 Author(s): Daxin Guo, Biying Zhang, Dong Wu, Xujun Hu, Hanxiao Tu February 23, 2023 https://www.sciencedirect.com/science/article/pii/S1874391923000416?dgcid=rss_sd_all
DiagnoMass: A proteomics hub for pinpointing discriminative spectral clusters
Journal of Proteomics ScienceDirect Publication: Journal of Proteomics ScienceDirect RSS DiagnoMass: A proteomics hub for pinpointing discriminative spectral clusters Publication date: 15 April 2023 Source: Journal of Proteomics, Volume 277 Author(s): Marlon D.M. Santos, Amanda C. Camillo-Andrade, Diogo B. Lima, Tatiana A.C.B. Souza, Juliana de S. da G. Fischer, Richard H. Valente, Fabio C. Gozzo, …
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Analysis of carbohydrates and glycoconjugates by matrixâassisted laser desorption/ionization mass spectrometry: An update for 2019â2020
Mass Spectrometry Reviews Wiley: Mass Spectrometry Reviews: Table of Contents Table of Contents for Mass Spectrometry Reviews. List of articles from both the latest and EarlyView issues. Analysis of carbohydrates and glycoconjugates by matrixâassisted laser desorption/ionization mass spectrometry: An update for 2019â2020 Abstract This review is the tenth update of the original article published in …
Oxygen intrusions sustain aerobic nitrite oxidation in anoxic marine zones
BioRxiv bioRxiv Subject Collection: Systems Biology This feed contains articles for bioRxiv Subject Collection "Systems Biology" Oxygen intrusions sustain aerobic nitrite oxidation in anoxic marine zones Anoxic marine zones (AMZs) are host to anaerobic metabolisms that drive losses of bioavailable nitrogen from the ocean. The discovery of active nitrite-oxidising bacteria (NOB), long thought to be …
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Machine learning-assisted medium optimization revealed the discriminated strategies for improved production of the foreign and native metabolites
BioRxiv bioRxiv Subject Collection: Systems Biology This feed contains articles for bioRxiv Subject Collection "Systems Biology" Machine learning-assisted medium optimization revealed the discriminated strategies for improved production of the foreign and native metabolites The medium composition was crucial for achieving the best performance of synthetic construction. What and how medium components determined the production of …
Generative machine learning produces kinetic models that accurately characterize intracellular metabolic states
BioRxiv bioRxiv Subject Collection: Systems Biology This feed contains articles for bioRxiv Subject Collection "Systems Biology" Generative machine learning produces kinetic models that accurately characterize intracellular metabolic states Large omics datasets are nowadays routinely generated to provide insights into cellular processes. Nevertheless, making sense of omics data and determining intracellular metabolic states remains challenging. Kinetic …
[ASAP] UHPLC-MS/MS-Based Identity Confirmation of Amino Acids Involved in Response to and Side Effects from Antiseizure Medications
Journal of Proteome Research Journal of Proteome Research: Latest Articles (ACS Publications) latest articles published in Journal of Proteome Research [ASAP] UHPLC-MS/MS-Based Identity Confirmation of Amino Acids Involved in Response to and Side Effects from Antiseizure Medications Journal of Proteome Research DOI: 10.1021/acs.jproteome.2c00835 Mo Awchi, Pablo Sinues, Alexandre N. Datta, Diego GarciĚa-GoĚmez, and Kapil Dev …
Quantitative proteomics reveals reduction in central carbon and energy metabolisms contributes to gentamicin resistance in Staphylococcus aureus
Journal of Proteomics ScienceDirect Publication: Journal of Proteomics ScienceDirect RSS Quantitative proteomics reveals reduction in central carbon and energy metabolisms contributes to gentamicin resistance in Staphylococcus aureus Publication date: 15 April 2023 Source: Journal of Proteomics, Volume 277 Author(s): Zhiyu Pan, Lvyuan Fan, Yilin Zhong, Juan Guo, Xuesa Dong, Xiao Xu, Chao Wang, Yubin Su …