Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Single‐cell transcriptomic survey of cell diversity and functional changes in yak hearts at different altitude Abstract The yak (Bos grunniens) is a species adapted to the hypoxic environment in the plateau area. The …
Author Archives: Kermit Murray
Utilizing high resolution ribosome profiling for the global investigation of gene expression in Chlamydomonas reinhardtii
BioRxiv bioRxiv Subject Collection: Systems Biology This feed contains articles for bioRxiv Subject Collection "Systems Biology" Utilizing high resolution ribosome profiling for the global investigation of gene expression in Chlamydomonas reinhardtii Ribosome profiling (Ribo-seq) is a powerful method for the deep analysis of translation mechanisms and regulatory circuits during gene expression in plant cells. Here, …
CRISPR interference screens reveal tradeoffs between growth rate and robustness in Synechocystis sp. PCC 6803 across trophic conditions
BioRxiv bioRxiv Subject Collection: Systems Biology This feed contains articles for bioRxiv Subject Collection "Systems Biology" CRISPR interference screens reveal tradeoffs between growth rate and robustness in Synechocystis sp. PCC 6803 across trophic conditions Barcoded mutant libraries are a powerful tool for elucidating gene function in microbes, particularly when screened in multiple growth conditions. Here, …
Coupling allows robust redox circadian rhythms despite heterogeneity and noise
BioRxiv bioRxiv Subject Collection: Systems Biology This feed contains articles for bioRxiv Subject Collection "Systems Biology" Coupling allows robust redox circadian rhythms despite heterogeneity and noise Circadian clocks are endogenous oscillators present in almost all cells that drive daily rhythms in physiology and behavior. There are two mechanisms that have been proposed to explain how …
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Phosphoproteomics of cellular mechanosensing reveals NFATC4 as a regulator of myofibroblast activity
BioRxiv bioRxiv Subject Collection: Systems Biology This feed contains articles for bioRxiv Subject Collection "Systems Biology" Phosphoproteomics of cellular mechanosensing reveals NFATC4 as a regulator of myofibroblast activity Feedback connections between tissue stiffness and cellular contractile forces can instruct cell identity and activity via a process referred to as mechanosensing. Specific phosphoproteome changes during mechanosensing …
Higher-order co-mutation interactions in mitochondrial genomes
BioRxiv bioRxiv Subject Collection: Systems Biology This feed contains articles for bioRxiv Subject Collection "Systems Biology" Higher-order co-mutation interactions in mitochondrial genomes Studies of pair-wise co-mutation of mitochondrial genome have already provided ample evidences about roles of genetic interactions in manifestation of phenotype under altered environmental conditions. High-altitude is one such condition which causes mitochondrial …
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The mechanism of Pseudomonas aeruginosa outer membrane vesicle biogenesis determines their protein composition
Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. The mechanism of Pseudomonas aeruginosa outer membrane vesicle biogenesis determines their protein composition Abstract Gram-negative bacteria produce outer membrane vesicles (OMVs) and contain bacterial cargo including nucleic acids and proteins. The proteome of …
Genetic and epigenetic control of the plant metabolome
Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Genetic and epigenetic control of the plant metabolome Abstract Plant metabolites are mainly produced through chemical reactions catalysed by enzymes encoded in the genome. Mutations in enzyme-encoding or transcription factor-encoding genes can alter …
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Recent developments and applications of selected ion flow tube mass spectrometry (SIFT‐MS)
Mass Spectrometry Reviews Wiley: Mass Spectrometry Reviews: Table of Contents Table of Contents for Mass Spectrometry Reviews. List of articles from both the latest and EarlyView issues. Recent developments and applications of selected ion flow tube mass spectrometry (SIFT‐MS) Abstract Selected ion flow tube mass spectrometry (SIFT-MS) is now recognized as the most versatile analytical technique for …
The isotope distribution: A rose with thorns
Mass Spectrometry Reviews Wiley: Mass Spectrometry Reviews: Table of Contents Table of Contents for Mass Spectrometry Reviews. List of articles from both the latest and EarlyView issues. The isotope distribution: A rose with thorns Abstract The isotope distribution, which reflects the number and probabilities of occurrence of different isotopologues of a molecule, can be theoretically …
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Characterization of the degradation products of lignocellulosic biomass by using tandem mass spectrometry experiments, model compounds, and quantum chemical calculations
Mass Spectrometry Reviews Wiley: Mass Spectrometry Reviews: Table of Contents Table of Contents for Mass Spectrometry Reviews. List of articles from both the latest and EarlyView issues. Characterization of the degradation products of lignocellulosic biomass by using tandem mass spectrometry experiments, model compounds, and quantum chemical calculations Abstract Biomass-derived degraded lignin and cellulose serve as …
Probing gas phase catalysis by atomic metal cations with flow tube mass spectrometry
Mass Spectrometry Reviews Wiley: Mass Spectrometry Reviews: Table of Contents Table of Contents for Mass Spectrometry Reviews. List of articles from both the latest and EarlyView issues. Probing gas phase catalysis by atomic metal cations with flow tube mass spectrometry Abstract The evolution and applications of flow tube mass spectrometry in the study of catalysis …
ISSUE INFORMATION ‐ ToC
Mass Spectrometry Reviews Wiley: Mass Spectrometry Reviews: Table of Contents Table of Contents for Mass Spectrometry Reviews. List of articles from both the latest and EarlyView issues. ISSUE INFORMATION ‐ ToC Mass Spectrometry Reviews, Volume 42, Issue 2, Page 453-455, March/April 2023. February 13, 2023 https://onlinelibrary.wiley.com/doi/10.1002/mas.21834?af=R
[ASAP] Interactomes of Glycogen Synthase Kinase‑3 Isoforms
Journal of Proteome Research Journal of Proteome Research: Latest Articles (ACS Publications) latest articles published in Journal of Proteome Research [ASAP] Interactomes of Glycogen Synthase Kinase‑3 Isoforms Journal of Proteome Research DOI: 10.1021/acs.jproteome.2c00825 Kevin W. Cormier, Brett Larsen, Anne-Claude Gingras, and James R. Woodgett February 13, 2023 http://dx.doi.org/10.1021/acs.jproteome.2c00825
[ASAP] Effect of Processing Methods of Human Saliva on the Proteomic Profile and Protein-Mediated Biological Processes
Journal of Proteome Research Journal of Proteome Research: Latest Articles (ACS Publications) latest articles published in Journal of Proteome Research [ASAP] Effect of Processing Methods of Human Saliva on the Proteomic Profile and Protein-Mediated Biological Processes Journal of Proteome Research DOI: 10.1021/acs.jproteome.2c00652 Luis Fernando B. Miranda, Carolina V. Lima, Rafaela Pagin, Raphael C. Costa, Marta …
Recent developments and applications of selected ion flow tube mass spectrometry (SIFT‐MS)
Mass Spectrometry Reviews Wiley: Mass Spectrometry Reviews: Table of Contents Table of Contents for Mass Spectrometry Reviews. List of articles from both the latest and EarlyView issues. Recent developments and applications of selected ion flow tube mass spectrometry (SIFT‐MS) Abstract Selected ion flow tube mass spectrometry (SIFT-MS) is now recognized as the most versatile analytical technique for …
The balance of acidic and hydrophobic residues predicts acidic transcriptional activation domains from protein sequence
BioRxiv bioRxiv Subject Collection: Systems Biology This feed contains articles for bioRxiv Subject Collection "Systems Biology" The balance of acidic and hydrophobic residues predicts acidic transcriptional activation domains from protein sequence Transcription factors activate gene expression in development, homeostasis, and stress with DNA binding domains and activation domains. Although there exist excellent computational models for …
Proteomic identification of intracellular vesicle trafficking and protein glycosylation requirements for lumen inflation in Ciona notochord
Proteomics (Wiley) Wiley: PROTEOMICS: Table of Contents Table of Contents for PROTEOMICS. List of articles from both the latest and EarlyView issues. Proteomic identification of intracellular vesicle trafficking and protein glycosylation requirements for lumen inflation in Ciona notochord Abstract Lumen formation and inflation are crucial steps for tubular organ morphogenesis, yet the underling mechanism remains …
Overview of omics applications in elucidating the underlying mechanisms of biochemical and biological factors associated with meat safety and nutrition
Journal of Proteomics ScienceDirect Publication: Journal of Proteomics ScienceDirect RSS Overview of omics applications in elucidating the underlying mechanisms of biochemical and biological factors associated with meat safety and nutrition Publication date: 30 March 2023 Source: Journal of Proteomics, Volume 276 Author(s): Xinrui Mao, Anthony Pius Bassey, Dongfang Sun, Kun Yang, Kai Shan, Chunbao Li …
Differences in aqueous humor protein profiles in patients with proliferative diabetic retinopathy before and after conbercept treatment
Journal of Proteomics ScienceDirect Publication: Journal of Proteomics ScienceDirect RSS Differences in aqueous humor protein profiles in patients with proliferative diabetic retinopathy before and after conbercept treatment Publication date: 30 March 2023 Source: Journal of Proteomics, Volume 276 Author(s): Tan Wang, Huan Chen, Xiaolan Du, Ningning Li, Youxin Chen, Hanyi Min February 11, 2023 https://www.sciencedirect.com/science/article/pii/S1874391923000271?dgcid=rss_sd_all