{"id":2710,"date":"2022-12-24T16:36:42","date_gmt":"2022-12-24T22:36:42","guid":{"rendered":"https:\/\/kermitmurray.com\/msblog\/?page_id=2710"},"modified":"2022-12-25T12:55:35","modified_gmt":"2022-12-25T18:55:35","slug":"mastodon-metabolomics","status":"publish","type":"page","link":"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-metabolomics\/","title":{"rendered":"Mastodon Metabolomics"},"content":{"rendered":"\n<div class=\"wp-block-caxton-grid relative\"><div class=\"absolute absolute--fill\"><div class=\"absolute absolute--fill cover bg-center\" style=\"background-color:;background-image:linear-gradient( );\"><\/div><div class=\"absolute absolute--fill\" style=\"background-color:;background-image:linear-gradient( );opacity:1;\"><\/div><\/div><div class=\"relative caxton-columns caxton-grid-block\" style=\"padding-top:0;padding-left:0;padding-bottom:0;padding-right:0;grid-template-columns:repeat(12, 1fr)\" data-tablet-css=\"padding-left:em;padding-right:em;\" data-mobile-css=\"padding-left:em;padding-right:em;\">\n<div class=\"wp-block-caxton-section relative\" style=\"grid-area:span 1\/span 8\"><div class=\"absolute absolute--fill\"><div class=\"absolute absolute--fill cover bg-center\" style=\"background-color:;background-image:linear-gradient( );\"><\/div><div class=\"absolute absolute--fill\" style=\"background-color:;background-image:linear-gradient( );opacity:1;\"><\/div><\/div><div class=\"relative caxton-section-block\" style=\"padding-top:5px;padding-left:5px;padding-bottom:5px;padding-right:5px\" data-mobile-css=\"padding-left:1em;padding-right:1em;\" data-tablet-css=\"padding-left:1em;padding-right:1em;\">\n<p><a href=\"https:\/\/mstdn.science\/tags\/Metabolomics\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>#Metabolomics<\/strong><\/a><\/p>\n<\/div><\/div>\n\n\n\n<div class=\"wp-block-caxton-section relative\" style=\"grid-area:span 1\/span 4\"><div class=\"absolute absolute--fill\"><div class=\"absolute absolute--fill cover bg-center\" style=\"background-color:;background-image:linear-gradient( );\"><\/div><div class=\"absolute absolute--fill\" style=\"background-color:;background-image:linear-gradient( );opacity:1;\"><\/div><\/div><div class=\"relative caxton-section-block\" style=\"padding-top:5px;padding-left:5px;padding-bottom:5px;padding-right:5px\" data-mobile-css=\"padding-left:1em;padding-right:1em;\" data-tablet-css=\"padding-left:1em;padding-right:1em;\">\n<p><strong><a href=\"https:\/\/mstdn.science\/tags\/Metabolomics.rss\" target=\"_blank\" rel=\"noreferrer noopener\">RSS<\/a><\/strong><\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n<ul class=\"has-dates has-authors has-excerpts wp-block-rss\"><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mstdn.science\/@deNBI\/116554997341798029'>(no title)<\/a><\/div><time datetime=\"2026-05-11T08:28:38-05:00\" class=\"wp-block-rss__item-publish-date\">May 11, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">\ud83c\uddee\ud83c\uddf9 Greetings from Rome!Last week, the HUPO-PSI Spring Meeting at the CNR brought together the global community to advance open data standards for #proteomics and #metabolomics. \ud83e\uddec@deNBI was thrilled to be part of the discussions! We organized a successful workshop Metabolomics &amp; MS Data Standards fostering collaboration across the field. \ud83e\udd1dStandardization is key to reproducible science! \ud83d\ude80#HUPOPSI #OpenData #Bioinformatics #deNBI #Metabolomics #MassSpec #FAIRdata #ScienceEvents<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.social\/@rmflight\/116539665280478638'>(no title)<\/a><\/div><time datetime=\"2026-05-08T15:29:29-05:00\" class=\"wp-block-rss__item-publish-date\">May 8, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">Working with data from Metabolomics Workbench again, and it always feels like the data is yelling at me with the fields in all caps.Now that I&#039;ve double checked, the Protein Data Bank file format was like this too, all caps everywhere (even more so).#metabolomics #bioinformatics<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.social\/@jpecol\/116471920232780151'>(no title)<\/a><\/div><time datetime=\"2026-04-26T16:21:02-05:00\" class=\"wp-block-rss__item-publish-date\">April 26, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">\u3010\ud83c\udf89Latest accepted article\u3011#NativePlantInvasion mediates coupled homogenization of #SoilMetabolomes and microbial functional groups on the Qinghai-Tibetan Plateau#Allelopathy | #AlphaDiversity | #BetaDiversity | #BioticHomogenization | #Metabolomicshttps:\/\/doi.org\/10.1093\/jpe\/rtag090<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.social\/@sflorg\/116436901491374546'>(no title)<\/a><\/div><time datetime=\"2026-04-20T11:55:18-05:00\" class=\"wp-block-rss__item-publish-date\">April 20, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">Researchers have identified composite blood biomarkers\u2014specific combinations of proteins and metabolites\u2014that can reliably detect early stages of colorectal, lung, and ovarian cancers. #Oncology #Proteomics #Metabolomics #Pathology #sflorghttps:\/\/www.sflorg.com\/2026\/04\/ongy04202601.html<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.africa\/@dtabb73\/116353024319257705'>(no title)<\/a><\/div><time datetime=\"2026-04-05T16:24:14-05:00\" class=\"wp-block-rss__item-publish-date\">April 5, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">Why has GC-MS (gas chromatography- electron impact ioniation- mass spectrometry) had such enduring value for the field of metabolomics? How do we identify metabolites based on mass spectrometry data?I hope you&#039;ll enjoy this video explaining the basics of GC-MS and the spectral library methods we use for explaining these spectra!https:\/\/www.youtube.com\/watch?v=vTWXkHPHEI0#bioinformatics#metabolomics #GCMS<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.africa\/@dtabb73\/116352937635734798'>(no title)<\/a><\/div><time datetime=\"2026-04-05T16:02:12-05:00\" class=\"wp-block-rss__item-publish-date\">April 5, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">Why would we choose to measure just a few metabolites instead of doing a broad untargeted survey? In two words: &quot;quantitative precision&quot;This is the first lecture recording I have produced with my new home video setup!https:\/\/www.youtube.com\/watch?v=fYY31STDYHA#metabolomics<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.africa\/@dtabb73\/116316978028786878'>(no title)<\/a><\/div><time datetime=\"2026-03-30T07:37:12-05:00\" class=\"wp-block-rss__item-publish-date\">March 30, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">I really appreciated this detailed post from Nicola Zamboni on #bioinformatics for #metabolomics !https:\/\/metabolomics.blog\/2026\/03\/how-we-analyze-untargeted-metabolomics-data\/<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.social\/@sflorg\/116257790903670956'>(no title)<\/a><\/div><time datetime=\"2026-03-19T20:45:08-05:00\" class=\"wp-block-rss__item-publish-date\">March 19, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">Researchers discovered that a metabolite known as pTOS, which drastically elevates in #pythons after large meals, successfully reduces food intake and drives weight loss in #obese laboratory mice. #Endocrinology #Pathology #Metabolomics #Zoology #sflorghttps:\/\/www.sflorg.com\/2026\/03\/bio03192602.html<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/fed.brid.gy\/r\/https:\/\/bsky.app\/profile\/did:plc:4wzcjjfuaqyg2i2hzedd7w5u\/post\/3mfcc2sc2fc2n'>(no title)<\/a><\/div><time datetime=\"2026-02-20T14:12:05-06:00\" class=\"wp-block-rss__item-publish-date\">February 20, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">We&#039;re hiring: POSTDOC in BIOINFORMATICS: Study the role of the gut #microbiome in the development of #immune tolerance. #multiomics #bioinformatics #metabolomics #Baltimore @medschool.umaryland.edu@bsky.brid.gy Learn more\/Apply: bit.ly\/bioinfoCAMRI<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mstdn.science\/@ecoevohealth\/116011027016780331'>(no title)<\/a><\/div><time datetime=\"2026-02-04T06:49:50-06:00\" class=\"wp-block-rss__item-publish-date\">February 4, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">Mathematical modelling led by @tsukushi_kamiya reveals the role of #nutrients in the stability of the vaginal #microbiota in a way that is consistent with #genomics and #metabolomics data shared by Jacques Ravel. This is one of the rare #models on this understudied #microbiome. https:\/\/doi.org\/10.1371\/journal.pbio.3003575\ud83d\ude4f Thanks to the #FRM for funding Tsukushi&#039;s post-doctoral fellowship and to @PeerCommunityIn for the #open peer-review process ( @PLOSBiology editors did not require any additional review!).<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.social\/@rmflight\/115986903538716043'>(no title)<\/a><\/div><time datetime=\"2026-01-31T00:34:55-06:00\" class=\"wp-block-rss__item-publish-date\">January 31, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">New preprint!An Integrated Multi-omic Analysis Reveals Novel Gene-Metabolite Relationships in Human Steatohepatitic Hepatocellular Carcinomahttps:\/\/www.medrxiv.org\/content\/10.64898\/2026.01.28.26344977v1Colleagues took paired samples of hepatocellularcarcinoma from several patients (8), and did bulk RNA-Seq, lipidomics, and metabolomics on the samples.We analyzed the data to see what was different in each modality, as well as what correlations could be found between RNA-Seq and metabolomics.#Bioinformatics #Metabolomics<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.social\/@rmflight\/115980579513847773'>(no title)<\/a><\/div><time datetime=\"2026-01-29T21:46:38-06:00\" class=\"wp-block-rss__item-publish-date\">January 29, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">Y&#039;all. I was having a full on Pikachu face today when I found discrepancies in what metabolites were included in my datasets and what were included in a colleagues datasets when we processed identical experiments from Metabolomics Workbench (I am borrowing some stuff they did with the exact same experiments to supplement my own work).Digging into it, I&#039;m removing things that are missing across more than X number of samples, the colleague kept everything. \ud83d\ude2e\u200d\ud83d\udca8#Metabolomics #Bioinformatics<\/div><\/li><\/ul>\n\n\n<hr class=\"wp-block-separator has-alpha-channel-opacity is-style-wide\"\/>\n\n\n\n<h4 class=\"wp-block-heading\">Related Feeds<\/h4>\n\n\n<ul class=\"su-siblings\"><li class=\"page_item page-item-2712\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-chemistry\/\">Mastodon Chemistry<\/a><\/li>\n<li class=\"page_item page-item-3092\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-kkmurray\/\">Mastodon kkmurray<\/a><\/li>\n<li class=\"page_item page-item-3062\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-kkmurray-rss\/\">Mastodon kkmurray RSS<\/a><\/li>\n<li class=\"page_item page-item-2717\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-lipidomics\/\">Mastodon Lipidomics<\/a><\/li>\n<li class=\"page_item page-item-2471\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-ms\/\">Mastodon Mass Spectrometry<\/a><\/li>\n<li class=\"page_item page-item-2714\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-physics\/\">Mastodon Physics<\/a><\/li>\n<li class=\"page_item page-item-2699\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-proteomics\/\">Mastodon Proteomics<\/a><\/li>\n<li class=\"page_item page-item-2719\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-spectroscopy\/\">Mastodon Spectroscopy<\/a><\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Related Feeds<\/p>\n","protected":false},"author":1,"featured_media":2502,"parent":2748,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-2710","page","type-page","status-publish","has-post-thumbnail","hentry","entry"],"_links":{"self":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2710","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/comments?post=2710"}],"version-history":[{"count":1,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2710\/revisions"}],"predecessor-version":[{"id":2711,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2710\/revisions\/2711"}],"up":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2748"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/media\/2502"}],"wp:attachment":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/media?parent=2710"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}