{"id":2710,"date":"2022-12-24T16:36:42","date_gmt":"2022-12-24T22:36:42","guid":{"rendered":"https:\/\/kermitmurray.com\/msblog\/?page_id=2710"},"modified":"2022-12-25T12:55:35","modified_gmt":"2022-12-25T18:55:35","slug":"mastodon-metabolomics","status":"publish","type":"page","link":"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-metabolomics\/","title":{"rendered":"Mastodon Metabolomics"},"content":{"rendered":"\n<div class=\"wp-block-caxton-grid relative\"><div class=\"absolute absolute--fill\"><div class=\"absolute absolute--fill cover bg-center\" style=\"background-color:;background-image:linear-gradient( );\"><\/div><div class=\"absolute absolute--fill\" style=\"background-color:;background-image:linear-gradient( );opacity:1;\"><\/div><\/div><div class=\"relative caxton-columns caxton-grid-block\" style=\"padding-top:0;padding-left:0;padding-bottom:0;padding-right:0;grid-template-columns:repeat(12, 1fr)\" data-tablet-css=\"padding-left:em;padding-right:em;\" data-mobile-css=\"padding-left:em;padding-right:em;\">\n<div class=\"wp-block-caxton-section relative\" style=\"grid-area:span 1\/span 8\"><div class=\"absolute absolute--fill\"><div class=\"absolute absolute--fill cover bg-center\" style=\"background-color:;background-image:linear-gradient( );\"><\/div><div class=\"absolute absolute--fill\" style=\"background-color:;background-image:linear-gradient( );opacity:1;\"><\/div><\/div><div class=\"relative caxton-section-block\" style=\"padding-top:5px;padding-left:5px;padding-bottom:5px;padding-right:5px\" data-mobile-css=\"padding-left:1em;padding-right:1em;\" data-tablet-css=\"padding-left:1em;padding-right:1em;\">\n<p><a href=\"https:\/\/mstdn.science\/tags\/Metabolomics\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>#Metabolomics<\/strong><\/a><\/p>\n<\/div><\/div>\n\n\n\n<div class=\"wp-block-caxton-section relative\" style=\"grid-area:span 1\/span 4\"><div class=\"absolute absolute--fill\"><div class=\"absolute absolute--fill cover bg-center\" style=\"background-color:;background-image:linear-gradient( );\"><\/div><div class=\"absolute absolute--fill\" style=\"background-color:;background-image:linear-gradient( );opacity:1;\"><\/div><\/div><div class=\"relative caxton-section-block\" style=\"padding-top:5px;padding-left:5px;padding-bottom:5px;padding-right:5px\" data-mobile-css=\"padding-left:1em;padding-right:1em;\" data-tablet-css=\"padding-left:1em;padding-right:1em;\">\n<p><strong><a href=\"https:\/\/mstdn.science\/tags\/Metabolomics.rss\" target=\"_blank\" rel=\"noreferrer noopener\">RSS<\/a><\/strong><\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n<ul class=\"has-dates has-authors has-excerpts wp-block-rss\"><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.social\/@sflorg\/116436901491374546'>(no title)<\/a><\/div><time datetime=\"2026-04-20T11:55:18-05:00\" class=\"wp-block-rss__item-publish-date\">April 20, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">Researchers have identified composite blood biomarkers\u2014specific combinations of proteins and metabolites\u2014that can reliably detect early stages of colorectal, lung, and ovarian cancers. #Oncology #Proteomics #Metabolomics #Pathology #sflorghttps:\/\/www.sflorg.com\/2026\/04\/ongy04202601.html<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.africa\/@dtabb73\/116353024319257705'>(no title)<\/a><\/div><time datetime=\"2026-04-05T16:24:14-05:00\" class=\"wp-block-rss__item-publish-date\">April 5, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">Why has GC-MS (gas chromatography- electron impact ioniation- mass spectrometry) had such enduring value for the field of metabolomics? How do we identify metabolites based on mass spectrometry data?I hope you&#039;ll enjoy this video explaining the basics of GC-MS and the spectral library methods we use for explaining these spectra!https:\/\/www.youtube.com\/watch?v=vTWXkHPHEI0#bioinformatics#metabolomics #GCMS<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.africa\/@dtabb73\/116352937635734798'>(no title)<\/a><\/div><time datetime=\"2026-04-05T16:02:12-05:00\" class=\"wp-block-rss__item-publish-date\">April 5, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">Why would we choose to measure just a few metabolites instead of doing a broad untargeted survey? In two words: &quot;quantitative precision&quot;This is the first lecture recording I have produced with my new home video setup!https:\/\/www.youtube.com\/watch?v=fYY31STDYHA#metabolomics<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.africa\/@dtabb73\/116316978028786878'>(no title)<\/a><\/div><time datetime=\"2026-03-30T07:37:12-05:00\" class=\"wp-block-rss__item-publish-date\">March 30, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">I really appreciated this detailed post from Nicola Zamboni on #bioinformatics for #metabolomics !https:\/\/metabolomics.blog\/2026\/03\/how-we-analyze-untargeted-metabolomics-data\/<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.social\/@sflorg\/116257790903670956'>(no title)<\/a><\/div><time datetime=\"2026-03-19T20:45:08-05:00\" class=\"wp-block-rss__item-publish-date\">March 19, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">Researchers discovered that a metabolite known as pTOS, which drastically elevates in #pythons after large meals, successfully reduces food intake and drives weight loss in #obese laboratory mice. #Endocrinology #Pathology #Metabolomics #Zoology #sflorghttps:\/\/www.sflorg.com\/2026\/03\/bio03192602.html<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/fed.brid.gy\/r\/https:\/\/bsky.app\/profile\/did:plc:4wzcjjfuaqyg2i2hzedd7w5u\/post\/3mfcc2sc2fc2n'>(no title)<\/a><\/div><time datetime=\"2026-02-20T14:12:05-06:00\" class=\"wp-block-rss__item-publish-date\">February 20, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">We&#039;re hiring: POSTDOC in BIOINFORMATICS: Study the role of the gut #microbiome in the development of #immune tolerance. #multiomics #bioinformatics #metabolomics #Baltimore @medschool.umaryland.edu@bsky.brid.gy Learn more\/Apply: bit.ly\/bioinfoCAMRI<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mstdn.science\/@ecoevohealth\/116011027016780331'>(no title)<\/a><\/div><time datetime=\"2026-02-04T06:49:50-06:00\" class=\"wp-block-rss__item-publish-date\">February 4, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">Mathematical modelling led by @tsukushi_kamiya reveals the role of #nutrients in the stability of the vaginal #microbiota in a way that is consistent with #genomics and #metabolomics data shared by Jacques Ravel. This is one of the rare #models on this understudied #microbiome. https:\/\/doi.org\/10.1371\/journal.pbio.3003575\ud83d\ude4f Thanks to the #FRM for funding Tsukushi&#039;s post-doctoral fellowship and to @PeerCommunityIn for the #open peer-review process ( @PLOSBiology editors did not require any additional review!).<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.social\/@rmflight\/115986903538716043'>(no title)<\/a><\/div><time datetime=\"2026-01-31T00:34:55-06:00\" class=\"wp-block-rss__item-publish-date\">January 31, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">New preprint!An Integrated Multi-omic Analysis Reveals Novel Gene-Metabolite Relationships in Human Steatohepatitic Hepatocellular Carcinomahttps:\/\/www.medrxiv.org\/content\/10.64898\/2026.01.28.26344977v1Colleagues took paired samples of hepatocellularcarcinoma from several patients (8), and did bulk RNA-Seq, lipidomics, and metabolomics on the samples.We analyzed the data to see what was different in each modality, as well as what correlations could be found between RNA-Seq and metabolomics.#Bioinformatics #Metabolomics<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.social\/@rmflight\/115980579513847773'>(no title)<\/a><\/div><time datetime=\"2026-01-29T21:46:38-06:00\" class=\"wp-block-rss__item-publish-date\">January 29, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">Y&#039;all. I was having a full on Pikachu face today when I found discrepancies in what metabolites were included in my datasets and what were included in a colleagues datasets when we processed identical experiments from Metabolomics Workbench (I am borrowing some stuff they did with the exact same experiments to supplement my own work).Digging into it, I&#039;m removing things that are missing across more than X number of samples, the colleague kept everything. \ud83d\ude2e\u200d\ud83d\udca8#Metabolomics #Bioinformatics<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.social\/@rmflight\/115968882828523547'>(no title)<\/a><\/div><time datetime=\"2026-01-27T20:12:00-06:00\" class=\"wp-block-rss__item-publish-date\">January 27, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">New lab paper is out! We&#039;ve released our python package mwtab v2 for interacting with the Metabolomics Workbench (MW) website, and updated the file status website with some measures of issues with the data available from MW!A Major Update and Improved Validation Functionality in the mwtab Python Library and the Metabolomics Workbench File Status Websitehttps:\/\/doi.org\/10.3390\/metabo16010076If you want a programmatic way to get data from MW, this might be useful.#Bioinformatics #Metabolomics<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/social.edu.nl\/@egonw\/115954643611623436'>(no title)<\/a><\/div><time datetime=\"2026-01-25T07:50:47-06:00\" class=\"wp-block-rss__item-publish-date\">January 25, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">#metabolomics postdoc &quot;The exact focus will be tailored to the candidate\u2019s strengths and evolving opportunities in the field.&quot; https:\/\/jobs.ethz.ch\/job\/view\/JOPG_ethz_1gSP4dmYD54u5EqbLs<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/mastodon.social\/@sflorg\/115933022088616833'>(no title)<\/a><\/div><time datetime=\"2026-01-21T12:12:09-06:00\" class=\"wp-block-rss__item-publish-date\">January 21, 2026<\/time> <div class=\"wp-block-rss__item-excerpt\">#Cancer immunotherapy is a type of cancer treatment that harnesses the #immune system to fight cancer cells. The treatment involves #CD8\u207a T cells, also known as killer T cells, which play a crucial role in attacking #tumors #Immunology #Oncology #Metabolomics #sflorghttps:\/\/www.sflorg.com\/2026\/01\/imgy01212601.html<\/div><\/li><\/ul>\n\n\n<hr class=\"wp-block-separator has-alpha-channel-opacity is-style-wide\"\/>\n\n\n\n<h4 class=\"wp-block-heading\">Related Feeds<\/h4>\n\n\n<ul class=\"su-siblings\"><li class=\"page_item page-item-2712\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-chemistry\/\">Mastodon Chemistry<\/a><\/li>\n<li class=\"page_item page-item-3092\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-kkmurray\/\">Mastodon kkmurray<\/a><\/li>\n<li class=\"page_item page-item-3062\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-kkmurray-rss\/\">Mastodon kkmurray RSS<\/a><\/li>\n<li class=\"page_item page-item-2717\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-lipidomics\/\">Mastodon Lipidomics<\/a><\/li>\n<li class=\"page_item page-item-2471\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-ms\/\">Mastodon Mass Spectrometry<\/a><\/li>\n<li class=\"page_item page-item-2714\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-physics\/\">Mastodon Physics<\/a><\/li>\n<li class=\"page_item page-item-2699\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-proteomics\/\">Mastodon Proteomics<\/a><\/li>\n<li class=\"page_item page-item-2719\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/mastodon-feeds\/mastodon-spectroscopy\/\">Mastodon Spectroscopy<\/a><\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Related Feeds<\/p>\n","protected":false},"author":1,"featured_media":2502,"parent":2748,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-2710","page","type-page","status-publish","has-post-thumbnail","hentry","entry"],"_links":{"self":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2710","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/comments?post=2710"}],"version-history":[{"count":1,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2710\/revisions"}],"predecessor-version":[{"id":2711,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2710\/revisions\/2711"}],"up":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2748"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/media\/2502"}],"wp:attachment":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/media?parent=2710"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}