{"id":2707,"date":"2022-12-24T10:59:10","date_gmt":"2022-12-24T16:59:10","guid":{"rendered":"https:\/\/kermitmurray.com\/msblog\/?page_id=2707"},"modified":"2022-12-25T09:56:00","modified_gmt":"2022-12-25T15:56:00","slug":"reddit-r-genomics","status":"publish","type":"page","link":"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/reddit-feeds\/reddit-r-genomics\/","title":{"rendered":"Reddit r\/genomics"},"content":{"rendered":"\n<div class=\"wp-block-caxton-grid relative\"><div class=\"absolute absolute--fill\"><div class=\"absolute absolute--fill cover bg-center\" style=\"background-color:;background-image:linear-gradient( );\"><\/div><div class=\"absolute absolute--fill\" style=\"background-color:;background-image:linear-gradient( );opacity:1;\"><\/div><\/div><div class=\"relative caxton-columns caxton-grid-block\" style=\"padding-top:0;padding-left:0;padding-bottom:0;padding-right:0;grid-template-columns:repeat(12, 1fr)\" data-tablet-css=\"padding-left:em;padding-right:em;\" data-mobile-css=\"padding-left:em;padding-right:em;\">\n<div class=\"wp-block-caxton-section relative\" style=\"grid-area:span 1\/span 8\"><div class=\"absolute absolute--fill\"><div class=\"absolute absolute--fill cover bg-center\" style=\"background-color:;background-image:linear-gradient( );\"><\/div><div class=\"absolute absolute--fill\" style=\"background-color:;background-image:linear-gradient( );opacity:1;\"><\/div><\/div><div class=\"relative caxton-section-block\" style=\"padding-top:5px;padding-left:5px;padding-bottom:5px;padding-right:5px\" data-mobile-css=\"padding-left:1em;padding-right:1em;\" data-tablet-css=\"padding-left:1em;padding-right:1em;\">\n<p><a href=\"https:\/\/www.reddit.com\/r\/genomics\/\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>\/r\/genomics\/<\/strong><\/a><\/p>\n<\/div><\/div>\n\n\n\n<div class=\"wp-block-caxton-section relative\" style=\"grid-area:span 1\/span 4\"><div class=\"absolute absolute--fill\"><div class=\"absolute absolute--fill cover bg-center\" style=\"background-color:;background-image:linear-gradient( );\"><\/div><div class=\"absolute absolute--fill\" style=\"background-color:;background-image:linear-gradient( );opacity:1;\"><\/div><\/div><div class=\"relative caxton-section-block\" style=\"padding-top:5px;padding-left:5px;padding-bottom:5px;padding-right:5px\" data-mobile-css=\"padding-left:1em;padding-right:1em;\" data-tablet-css=\"padding-left:1em;padding-right:1em;\">\n<p><strong><a href=\"https:\/\/www.reddit.com\/r\/genomics.rss\" target=\"_blank\" rel=\"noreferrer noopener\">RSS<\/a><\/strong><\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n<ul class=\"has-dates has-authors has-excerpts wp-block-rss\"><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/genomics\/comments\/1ucuzkq\/publishing_pure_bioinformatics_metaanalyses_yay\/'>Publishing Pure Bioinformatics Meta-Analyses: Yay or Nay?<\/a><\/div><time datetime=\"2026-06-22T19:51:56-05:00\" class=\"wp-block-rss__item-publish-date\">June 22, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/Sea_Parsnip_7442<\/span><div class=\"wp-block-rss__item-excerpt\">submitted by \/u\/Sea_Parsnip_7442 [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/genomics\/comments\/1ucky9g\/a_public_catalogue_of_crispr_experiments_useful\/'>A public catalogue of CRISPR experiments &#8211; useful or not?<\/a><\/div><time datetime=\"2026-06-22T13:42:53-05:00\" class=\"wp-block-rss__item-publish-date\">June 22, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/Ok_Writing_2525<\/span><div class=\"wp-block-rss__item-excerpt\">submitted by \/u\/Ok_Writing_2525 [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/genomics\/comments\/1ubxgfk\/need_help_with_microbiome_differencial_abundance\/'>Need help with Microbiome Differencial abundance analysis using ANCOMBC2<\/a><\/div><time datetime=\"2026-06-21T18:31:17-05:00\" class=\"wp-block-rss__item-publish-date\">June 21, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/DrOfThugonomics<\/span><div class=\"wp-block-rss__item-excerpt\">submitted by \/u\/DrOfThugonomics [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/genomics\/comments\/1ubwqbv\/codon_kmap_final_version\/'>Codon K-map (final version)<\/a><\/div><time datetime=\"2026-06-21T18:02:24-05:00\" class=\"wp-block-rss__item-publish-date\">June 21, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/Left_Ad8814<\/span><div class=\"wp-block-rss__item-excerpt\">submitted by \/u\/Left_Ad8814 [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/genomics\/comments\/1ubppgf\/capstone_project_team_for_gene_lab_gl4hs\/'>Capstone Project Team for Gene Lab GL4HS<\/a><\/div><time datetime=\"2026-06-21T13:11:08-05:00\" class=\"wp-block-rss__item-publish-date\">June 21, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/nehadaspal<\/span><div class=\"wp-block-rss__item-excerpt\">Hi everyone! I&#039;m Neha! I&#039;m looking for a team to make a capstone project for the Gene Lab NASA Program GL4HS. I&#039;m extremely interested in neuroscience and microbiology. \u200b I have extensive experience in microbiology where I work on a project testing the effects of microplastics on C. elegans for 3 years, and wrote a research paper and presented it at Columbia. \u200b I have cool ideas for this project! So I&#039;m looking for determined and driven individuals. \u200b Please email at [ndpal34@gmail.com](mailto:ndpal34@gmail.com) if you are interested. Thanks! submitted by \/u\/nehadaspal [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/genomics\/comments\/1uaf0f3\/revised_kmap_codon_chart\/'>Revised K-map codon chart<\/a><\/div><time datetime=\"2026-06-19T21:58:35-05:00\" class=\"wp-block-rss__item-publish-date\">June 19, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/Left_Ad8814<\/span><div class=\"wp-block-rss__item-excerpt\">This version of the chart I put together is cleaner and covers more edge-case caveats. Feel free to share, provide feedback or suggestions, and use if it helps! submitted by \/u\/Left_Ad8814 [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/genomics\/comments\/1ua8o7s\/analysis_of_173303_exomes_and_genomes_in_the\/'>Analysis of 173,303 exomes and genomes in the Pakistan Genome Resource<\/a><\/div><time datetime=\"2026-06-19T17:46:45-05:00\" class=\"wp-block-rss__item-publish-date\">June 19, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/Holodoxa<\/span><div class=\"wp-block-rss__item-excerpt\">submitted by \/u\/Holodoxa [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/genomics\/comments\/1u9thza\/opensource_genotype_analysis_toolkit_annotates\/'>Open-source genotype analysis toolkit &#8211; annotates raw data against 7 databases (ClinVar, GWAS Catalog, PharmGKB, SNPedia, gnomAD, AlphaMissense, CADD)<\/a><\/div><time datetime=\"2026-06-19T05:43:50-05:00\" class=\"wp-block-rss__item-publish-date\">June 19, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/PenfieldLabs<\/span><div class=\"wp-block-rss__item-excerpt\">Allelix is a CLI tool that takes a raw data file and annotates every variant against 7 reference databases, producing an HTML or JSON report. Supports 23andMe, AncestryDNA, VCF, and gVCF (compressed or uncompressed) &#8211; so it works with both consumer genotyping and WGS data. Three report types: full analysis (all databases, configurable magnitude filter), methylation pathway (MTHFR\/MTR\/MTRR\/COMT\/CBS), and pharmacogenomics (drug-gene interactions). Runs locally on your machine \u2014 no data leaves your computer. On an M3 MacBook it handles VCF files over 1 GB in under 2 minutes. https:\/\/github.com\/allelix\/allelix AGPL-3.0 licensed. Feedback, bug reports, and feature requests welcome. Allelix v2.2.1 [&hellip;]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/genomics\/comments\/1u9oy8g\/any_french_in_the_field_of_genomics\/'>Any French in the field of genomics?<\/a><\/div><time datetime=\"2026-06-19T01:53:22-05:00\" class=\"wp-block-rss__item-publish-date\">June 19, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/marketern<\/span><div class=\"wp-block-rss__item-excerpt\">Any French in the field of genomics? submitted by \/u\/marketern [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/genomics\/comments\/1u9lyr3\/updated_karnaughmapstyle_periodic_table_of_codons\/'>Updated: Karnaugh-map-style periodic table of codons<\/a><\/div><time datetime=\"2026-06-18T23:32:45-05:00\" class=\"wp-block-rss__item-publish-date\">June 18, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/Left_Ad8814<\/span><div class=\"wp-block-rss__item-excerpt\">The goal was to arrange the 64 coding-strand DNA codons so adjacent cells differ by minimal nucleotide-level changes, similar to how Karnaugh maps use Gray-code ordering. After assigning each base a two-bit value using purine\/pyrimidine size and Watson-Crick pairing strength, the codons can be laid out in a way that exposes clusters of synonymous codons, chemically similar amino acids, and control signals. submitted by \/u\/Left_Ad8814 [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/genomics\/comments\/1u9eko1\/genetic_gray_code\/'>Genetic Gray Code<\/a><\/div><time datetime=\"2026-06-18T18:39:35-05:00\" class=\"wp-block-rss__item-publish-date\">June 18, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/Left_Ad8814<\/span><div class=\"wp-block-rss__item-excerpt\">This is a color-coded, periodic-table-style DNA codon chart for translating coding-strand DNA triplets into amino acids, start, and stop signals. Its main strengths are fast lookup, visual grouping, and beginner-friendly mutation analysis. Its main limitations are that it assumes the standard genetic code, does not determine reading frame, and must be used carefully with template DNA or mRNA. I had been sitting with this chart for about a year now. The idea came to me one day after a digital logic class: Karnaugh maps use gray code specifically to minimizes changes between adjacent cells, so why can&#039;t the genetic code [&hellip;]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/genomics\/comments\/1u91pyq\/multiomics_analysis_positions_dna2_at_the\/'>Multi-omics analysis positions DNA2 at the interface of genome integrity programs and tumor behavior in pan-cancer<\/a><\/div><time datetime=\"2026-06-18T09:37:14-05:00\" class=\"wp-block-rss__item-publish-date\">June 18, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/Acrobatic-Teach-3115<\/span><div class=\"wp-block-rss__item-excerpt\">submitted by \/u\/Acrobatic-Teach-3115 [link] [comments]<\/div><\/li><\/ul>\n\n\n<hr class=\"wp-block-separator has-alpha-channel-opacity is-style-wide\"\/>\n\n\n\n<h4 class=\"wp-block-heading\">Related Feeds<\/h4>\n\n\n<ul class=\"su-siblings\"><li class=\"page_item page-item-2733\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/reddit-feeds\/reddit-r-analyticalchemistry\/\">Reddit r\/analyticalchemistry<\/a><\/li>\n<li class=\"page_item page-item-2473\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/reddit-feeds\/reddit-r-massspectrometry\/\">Reddit r\/massspectrometry<\/a><\/li>\n<li class=\"page_item page-item-2705\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/reddit-feeds\/reddit-r-metabolomics\/\">Reddit r\/metabolomics<\/a><\/li>\n<li class=\"page_item page-item-2499\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/reddit-feeds\/reddit-r-proteomics\/\">Reddit r\/proteomics<\/a><\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Related Feeds<\/p>\n","protected":false},"author":1,"featured_media":2498,"parent":2738,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-2707","page","type-page","status-publish","has-post-thumbnail","hentry","entry"],"_links":{"self":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2707","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/comments?post=2707"}],"version-history":[{"count":2,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2707\/revisions"}],"predecessor-version":[{"id":2746,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2707\/revisions\/2746"}],"up":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2738"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/media\/2498"}],"wp:attachment":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/media?parent=2707"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}