{"id":2705,"date":"2022-12-24T10:55:36","date_gmt":"2022-12-24T16:55:36","guid":{"rendered":"https:\/\/kermitmurray.com\/msblog\/?page_id=2705"},"modified":"2022-12-25T09:54:35","modified_gmt":"2022-12-25T15:54:35","slug":"reddit-r-metabolomics","status":"publish","type":"page","link":"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/reddit-feeds\/reddit-r-metabolomics\/","title":{"rendered":"Reddit r\/metabolomics"},"content":{"rendered":"\n<div class=\"wp-block-caxton-grid relative\"><div class=\"absolute absolute--fill\"><div class=\"absolute absolute--fill cover bg-center\" style=\"background-color:;background-image:linear-gradient( );\"><\/div><div class=\"absolute absolute--fill\" style=\"background-color:;background-image:linear-gradient( );opacity:1;\"><\/div><\/div><div class=\"relative caxton-columns caxton-grid-block\" style=\"padding-top:0;padding-left:0;padding-bottom:0;padding-right:0;grid-template-columns:repeat(12, 1fr)\" data-tablet-css=\"padding-left:em;padding-right:em;\" data-mobile-css=\"padding-left:em;padding-right:em;\">\n<div class=\"wp-block-caxton-section relative\" style=\"grid-area:span 1\/span 8\"><div class=\"absolute absolute--fill\"><div class=\"absolute absolute--fill cover bg-center\" style=\"background-color:;background-image:linear-gradient( );\"><\/div><div class=\"absolute absolute--fill\" style=\"background-color:;background-image:linear-gradient( );opacity:1;\"><\/div><\/div><div class=\"relative caxton-section-block\" style=\"padding-top:5px;padding-left:5px;padding-bottom:5px;padding-right:5px\" data-mobile-css=\"padding-left:1em;padding-right:1em;\" data-tablet-css=\"padding-left:1em;padding-right:1em;\">\n<p><a href=\"https:\/\/www.reddit.com\/r\/metabolomics\/\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>\/r\/metabolomics\/<\/strong><\/a><\/p>\n<\/div><\/div>\n\n\n\n<div class=\"wp-block-caxton-section relative\" style=\"grid-area:span 1\/span 4\"><div class=\"absolute absolute--fill\"><div class=\"absolute absolute--fill cover bg-center\" style=\"background-color:;background-image:linear-gradient( );\"><\/div><div class=\"absolute absolute--fill\" style=\"background-color:;background-image:linear-gradient( );opacity:1;\"><\/div><\/div><div class=\"relative caxton-section-block\" style=\"padding-top:5px;padding-left:5px;padding-bottom:5px;padding-right:5px\" data-mobile-css=\"padding-left:1em;padding-right:1em;\" data-tablet-css=\"padding-left:1em;padding-right:1em;\">\n<p><strong><a href=\"https:\/\/www.reddit.com\/r\/metabolomics.rss\" target=\"_blank\" rel=\"noreferrer noopener\">RSS<\/a><\/strong><\/p>\n<\/div><\/div>\n<\/div><\/div>\n\n\n<ul class=\"has-dates has-authors has-excerpts wp-block-rss\"><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/metabolomics\/comments\/1tbp6ue\/is_the_metlin_database_publically_avialable\/'>Is the METLIN database publically avialable?<\/a><\/div><time datetime=\"2026-05-13T04:33:39-05:00\" class=\"wp-block-rss__item-publish-date\">May 13, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/YouPretend1161<\/span><div class=\"wp-block-rss__item-excerpt\">I have been trying to access METLIN databse but unfortunately I don&#039;t have access. anyone facing the same issue? submitted by \/u\/YouPretend1161 [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/metabolomics\/comments\/1sp7g3u\/i_built_a_cyberbiopunk_metabolomic_health_channel\/'>I built a Cyber-Biopunk metabolomic health channel. 4 videos in \u2014 here&#039;s what that actually looks like.<\/a><\/div><time datetime=\"2026-04-18T19:48:05-05:00\" class=\"wp-block-rss__item-publish-date\">April 18, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/Select-Wear-7859<\/span><div class=\"wp-block-rss__item-excerpt\">Started with clean molecular animations and documentary-style footage. Standard stuff. Knew immediately it wasn&#039;t right. By video 2 the aesthetic had shifted \u2014 glitch effects on damaged mitochondria, organs rendered as industrial machinery, circuit board floors under food shots, full-screen red TOXIC ALDEHYDE title cards. By video 3 the language was locked: \u2014 Rusted liver caged in gears pumped with purple fluid \u2014 HUD overlays mapping fructose from mouth to liver in real time like a threat assessment \u2014 Cyan \/ purple \/ red \/ black. Always. \u2014 Body as hardware. Blood as data stream. Food as input. Video 4 [&hellip;]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/metabolomics\/comments\/1sbl4xf\/data_independent_aquisition_on_agilent_6545_system\/'>Data independent Aquisition on Agilent 6545 System.<\/a><\/div><time datetime=\"2026-04-03T18:10:09-05:00\" class=\"wp-block-rss__item-publish-date\">April 3, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/DartLc<\/span><div class=\"wp-block-rss__item-excerpt\">submitted by \/u\/DartLc [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/metabolomics\/comments\/1sadtvv\/i_source_fragmentation_can_you_ramp_conecapillary\/'>I source fragmentation &#8211; can you ramp cone\/capillary voltage?<\/a><\/div><time datetime=\"2026-04-02T10:39:34-05:00\" class=\"wp-block-rss__item-publish-date\">April 2, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/Greg_T_24<\/span><div class=\"wp-block-rss__item-excerpt\">hi r\/metabolics I&#039;m still a bit of a novice with metabolomics, this sub has been a mine of fantastic information. I&#039;m currently looking at my dataset which has patient plasma run on a hilic plus orbitrap paradigm. I can see from a library developed for this assay (same column and mobile phase conditions) that some metabolites look to have decayed at the source. I can&#039;t know for sure, but knock a water molecule off my target mass and there&#039;s a likely candidate at the correct rt. I know in-source fragmentation products are a big deal in metabolomics and it got [&hellip;]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/metabolomics\/comments\/1s54pdt\/metabolomics_and_sirius\/'>Metabolomics and SIRIUS<\/a><\/div><time datetime=\"2026-03-27T13:52:25-05:00\" class=\"wp-block-rss__item-publish-date\">March 27, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/jrcantero<\/span><div class=\"wp-block-rss__item-excerpt\">submitted by \/u\/jrcantero [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/metabolomics\/comments\/1s108eh\/why_most_dna_reports_feel_useless\/'>Why most DNA reports feel useless<\/a><\/div><time datetime=\"2026-03-22T23:04:43-05:00\" class=\"wp-block-rss__item-publish-date\">March 22, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/sage_pen85<\/span><div class=\"wp-block-rss__item-excerpt\">I\u2019ve been going down the rabbit hole of personal DNA data lately, and I realized something: Most DNA reports aren\u2019t actually wrong \u2014 they\u2019re just answering the wrong question. They usually focus on: \u201cWhat variants (SNPs) do you have?\u201d But that never felt actionable to me. Just a long list of genetic trivia. Biology doesn\u2019t really work like a checklist of SNPs. It works more like a set of systems under pressure. So I started looking into a different approach: Instead of listing variants, you model how those variants interact \u2014 kind of like constraints in a system \u2014 and [&hellip;]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/metabolomics\/comments\/1rtrr0v\/msdial_wont_pick_up_ms2_data_help\/'>MSDIAL wont pick up MS2 data. Help!<\/a><\/div><time datetime=\"2026-03-14T19:00:53-05:00\" class=\"wp-block-rss__item-publish-date\">March 14, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/Tiny-Reception3880<\/span><div class=\"wp-block-rss__item-excerpt\">submitted by \/u\/Tiny-Reception3880 [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/metabolomics\/comments\/1rr7w45\/i_made_a_quick_and_easytouse_chemical_translation\/'>I made a quick and easy-to-use Chemical Translation Service!<\/a><\/div><time datetime=\"2026-03-11T21:59:35-05:00\" class=\"wp-block-rss__item-publish-date\">March 11, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/minisculecoconut<\/span><div class=\"wp-block-rss__item-excerpt\">The database used is an augmented version of PubChemLite. I would really appreciate any feedback, thanks! submitted by \/u\/minisculecoconut [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/metabolomics\/comments\/1reihjx\/masschromaaa\/'>MassChromAAA<\/a><\/div><time datetime=\"2026-02-25T16:47:08-06:00\" class=\"wp-block-rss__item-publish-date\">February 25, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/Intelligent_Bench734<\/span><div class=\"wp-block-rss__item-excerpt\">submitted by \/u\/Intelligent_Bench734 [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/metabolomics\/comments\/1qizzhz\/plant_phylogenetics_metabolomics_in_silico\/'>Plant phylogenetics + metabolomics in silico<\/a><\/div><time datetime=\"2026-01-21T14:54:39-06:00\" class=\"wp-block-rss__item-publish-date\">January 21, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/emowerewolf2004<\/span><div class=\"wp-block-rss__item-excerpt\">Problem with the article Hello, everybody. I&#039;m getting my Master&#039;s Degree in Biomedicine, and i&#039;m trying to do phylogenetic analysis of Rhodiola rosea to prove the hypothesis that my region&#039;s phenotype is best producer of salidroside. I&#039;m planning to use available data from NCBI and other open sources. For phylogenetic analysis I&#039;m considering choosing matK, MYB genes; I tested MEGA for basic phylogenetic analysis using those genes from different Rhodiola rosea species and also form other Rhodiolas. I need to hear some criticism from people who worked with plant&#039;s bioinformatics, phylogenetics. Any advice would be much appreciated! Thanks! submitted by [&hellip;]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/metabolomics\/comments\/1qct40l\/human_lymph_control_group_proteomics_dataset\/'>Human Lymph Control Group proteomics dataset<\/a><\/div><time datetime=\"2026-01-14T17:15:37-06:00\" class=\"wp-block-rss__item-publish-date\">January 14, 2026<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/FactorAgreeable7518<\/span><div class=\"wp-block-rss__item-excerpt\">submitted by \/u\/FactorAgreeable7518 [link] [comments]<\/div><\/li><li class='wp-block-rss__item'><div class='wp-block-rss__item-title'><a href='https:\/\/www.reddit.com\/r\/metabolomics\/comments\/1py4fo5\/question_on_coding_rbiopython_to_learn\/'>Question on coding R\/Biopython to learn<\/a><\/div><time datetime=\"2025-12-28T22:24:59-06:00\" class=\"wp-block-rss__item-publish-date\">December 28, 2025<\/time> <span class=\"wp-block-rss__item-author\">by \/u\/FactorAgreeable7518<\/span><div class=\"wp-block-rss__item-excerpt\">submitted by \/u\/FactorAgreeable7518 [link] [comments]<\/div><\/li><\/ul>\n\n\n<hr class=\"wp-block-separator has-alpha-channel-opacity is-style-wide\"\/>\n\n\n\n<h4 class=\"wp-block-heading\">Related Feeds<\/h4>\n\n\n<ul class=\"su-siblings\"><li class=\"page_item page-item-2733\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/reddit-feeds\/reddit-r-analyticalchemistry\/\">Reddit r\/analyticalchemistry<\/a><\/li>\n<li class=\"page_item page-item-2707\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/reddit-feeds\/reddit-r-genomics\/\">Reddit r\/genomics<\/a><\/li>\n<li class=\"page_item page-item-2473\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/reddit-feeds\/reddit-r-massspectrometry\/\">Reddit r\/massspectrometry<\/a><\/li>\n<li class=\"page_item page-item-2499\"><a href=\"https:\/\/kermitmurray.com\/msblog\/links\/social-feeds\/reddit-feeds\/reddit-r-proteomics\/\">Reddit r\/proteomics<\/a><\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Related Feeds<\/p>\n","protected":false},"author":1,"featured_media":2498,"parent":2738,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-2705","page","type-page","status-publish","has-post-thumbnail","hentry","entry"],"_links":{"self":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2705","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/comments?post=2705"}],"version-history":[{"count":1,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2705\/revisions"}],"predecessor-version":[{"id":2706,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2705\/revisions\/2706"}],"up":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/pages\/2738"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/media\/2498"}],"wp:attachment":[{"href":"https:\/\/kermitmurray.com\/msblog\/wp-json\/wp\/v2\/media?parent=2705"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}